Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq2224 324 2e-83 seq1 102 1e-16 >seq2224 Length=1872321 Score = 324 bits (358), Expect = 2e-83 Identities = 768/1145 (67%), Gaps = 48/1145 (4%) Strand=Plus/Plus Query 168268 CCTAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCT 168327 |||| ||||| ||||||| |||||||||||| || || | |||||||| || | || Sbjct 868986 CCTACCCCTTCACGCACACCACCTGCTTGAGTGTATGCACCACCTCCACCAAGTCCTGCT 869045 Query 168328 GGGCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTT 168387 | |||||||| || ||||| ||||| ||| | || | |||||||||||| ||| Sbjct 869046 GCGCCGCCATCACCGCGTCGATGTCTTTGTAGGCCATGGGGATTTCGTCGATCACGGCTT 869105 Query 168388 CGTCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCT 168447 |||| |||||||| || || || |||||||| || ||| ||||||| || || | || Sbjct 869106 CGTCTTTGCGGCATTCCACACCGGCCGTGGCTTGGATGTGGTCGTCCACGGTGAACATCT 869165 Query 168448 TCTTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCA-CGAGCAGAAGGCG 168506 |||| ||| | || ||| |||||||| |||||||||||||| | || ||| Sbjct 869166 TCTTGGCCTTGGTGCGGCTCATCACGCGGCCCGCGCCGTGGCTGCAGCTCTCA-AAGCTT 869224 Query 168507 TCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATG 168566 || | || |||| ||||||||||||| | |||||||| ||||| |||||| Sbjct 869225 TCCGGGTTGCCCAGGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCCGGGATGATG 869284 Query 168567 CCGAGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCG 168626 || || ||| |||||| || |||||||||||||||||||||||| | ||| || || Sbjct 869285 CCCAGCTCGCCCTTCTTAGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCTTCACCA 869344 Query 168627 AAGTGGCGTTCCTTGTTG-ACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTT 168685 |||||||| | |||| || || ||||||||||| ||||||||||| || ||| | || Sbjct 869345 AAGTGGCGCT-CTTGCTGCACATAGTTGTGGTGGCAGTTCACCGCCTCGATGTGCGACTC 869403 Query 168686 GAACG---CCGGCACGAACTCCCG---GATCGCCTTGAGCACGCGGACCATCATCATGTC 168739 |||| | | || || || | | || |||| | | ||||||||| || Sbjct 869404 AAACGGTTTGGTGATGACCTGTCGCACGGTGGCAATGAG---GTTGGCCATCATCACTTC 869460 Query 168740 GCGGTTCAGGCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATC 168799 |||||| | |||| || | |||||||| ||||| || | |||||| | || | Sbjct 869461 GCGGTTACGCTGCGCAAACTTCTGCGCCCAACCCACCGCGCGCACATAGTCGCCAAAGTA 869520 Query 168800 CTGCTCGCCCACTTCGAGCCACGCGAGGTTCTCGTCCTGCGG---GCGCACATGGCGCTT 168856 |||| | ||| |||||| | || | || || || || | ||| | ||||| Sbjct 869521 CTGCGCCCCCTCTTCGAAGTAGGCCAAGTCTTCATCGGGCAGGTTGCGTTGGTTGCGCTC 869580 Query 168857 TGCCAGGGCGTTCTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCG 168916 || | | ||||| ||| ||||||||| | | ||||||| | ||||| || || || Sbjct 869581 GGC---GTCCTTCTTGGCCAGCTCGATGAAATGGGTGCCGATGGCATTGCCCACCCCACG 869637 Query 168917 CGATCCCGAGTGCAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGAT 168976 ||| || ||||||||||| | |||||| || ||| || ||| | | Sbjct 869638 CGAACCGGAGTGCAGCATGAACCACAC------------CGCCCCTTGCTCG---TCCAG 869682 Query 168977 GCAGATTTCGATGAAGTGGTTGCCGCCACCCAGCGACCCGAGTTGGGTCACGTTGTTCGA 169036 ||||| ||||||||||||||| || |||| | || || || | |||||| | Sbjct 869683 GCAGACTTCGATGAAGTGGTTACCCGTCCCCAAAGTGCCCAGGTGTTTGCGGTTGTTGGT 869742 Query 169037 CGTCTCCAAGATCGGATGCTTTTCGCACAGCTTCTTGAACCGCGCCTCCAGCCCAGAATC 169096 ||| || | ||| ||| ||||||||| | |||| | ||||| | Sbjct 869743 GTTCTTCAGGCGCGGGTGCAGCTCGCACAGCGCGTCGAACTCATCAGCCAGCGTGGCCCA 869802 Query 169097 GATCCAGGCACGCATGATAGAGTTCGGGATGCCATGACGACCCGGTTCCTGCCACGAACC 169156 |||| | | | || | | || | | ||| | | |||| | |||| || Sbjct 869803 GATCTGGTCCACCGTG-TCGGGTGGGTTCTCCCA-GCTG--CCGG----GGTCACGGCCC 869854 Query 169157 CTTCGCGCCCGGC---CCGCCGTGCGGAACCGCACGTTCGATCGCCGAACGCATCGCCGC 169213 | || || |||| ||||||||| || || || || |||| ||||| | | Sbjct 869855 CCACG-GCGCGGCGAGAAGCCGTGCGGCACGGCCTTCTCAATGGCCGCACGCAGTGGGCC 869913 Query 169214 CAAGTTGTCCGGCAGTTGCGAAGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCC 169273 |||||||| ||||| | ||| || ||||| | |||||||| |||||||| Sbjct 869914 TAAGTTGTCGGGCAGGTCTTCAGCGCGCAAGGTGGTCTTGGCCGCCATCATTCCGCAGCC 869973 Query 169274 GATGTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACCAAC 169333 ||||| || || ||||| |||||| | || | |||||| | |||||| || || Sbjct 869974 AATGTCTACTCCCACCGCCGCCGGGATGATGGCCTTGAAGGTCGGCACCACCGAGCCCAC 870033 Query 169334 GGCTGCGCC-GTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTTGAACACGAACG 169392 | || || ||||| ||| ||||||||||| |||||| ||| ||||| | || | Sbjct 870034 CGTGGCACCAATACCC-AAGTGCACGTCGGGCATGGCCGCGATGTGTTTGAAGATGATGG 870092 Query 169393 GCAGC 169397 ||||| Sbjct 870093 GCAGC 870097 >seq1 Length=2207822 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 392964 GCGGGGTGGAGCAGTCTGGTAGCTCGTTGGGCTCATAACCCAAAGGTCGCAGGTTCAAAT 393023 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 393024 CCTGCCCCCGCAACCA 393039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895564852560000