Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq2224 241 2e-58 >seq2224 Length=1872321 Score = 241 bits (266), Expect = 2e-58 Identities = 656/983 (67%), Gaps = 55/983 (6%) Strand=Plus/Plus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGCCTTGGC 139564 |||||| || || || | || || | ||| ||||| |||| ||||| |||||| Sbjct 869113 GCGGCATTCCACACCGGCCGTGGCTTGGATGTGGTCGTCCACGGTGAACATCTTCTTGGC 869172 Query 139565 GGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGT-CGGCGT 139623 |||||| ||| || ||||||||||| ||| | | || | | | | || Sbjct 869173 CTTGGTGCGGCTCATCACGCGGCCCGCGCCGTGGCTGCA-GCTCTCAAAGCTTTCCGGGT 869231 Query 139624 TGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACT 139683 ||||| |||||||||||||||| || ||||| ||| ||||||||||| | || Sbjct 869232 TGCCCAGGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCCGGGATGATGCCCAGCT 869291 Query 139684 GGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGA 139743 | |||||| ||| |||||||||||||||||||||||| || || | |||||| Sbjct 869292 CGCCCTTCTTAGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCTTCACCAAAGTGGC 869351 Query 139744 ACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGG-- 139801 ||| | ||| || ||||||||||||||||||||||| || ||| || || || || Sbjct 869352 GCTCTTGCTGCACATAGTTGTGGTGGCAGTTCACCGCCTCGATGTGCGACTCAAACGGTT 869411 Query 139802 -CGGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGA 139860 | | | || |||| || | | | || | |||||||| |||||||| Sbjct 869412 TGGTGATGACC---TGTCGCACGGTGGCAATGAGGTTGGCCATCATCACTTCGCGGTTAC 869468 Query 139861 TCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGC 139920 | |||| || | ||| |||| | || || ||| |||||| || | | || | | Sbjct 869469 GCTGCGCAAACTTCTGCGCCCAACCCACCGCGCGCACATAGTCGCCAAAGTACTGCGCCC 869528 Query 139921 CTTC--CGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCAT 139978 | || ||| || | || | ||| | ||| || | || | || || | | || | Sbjct 869529 CCTCTTCGA-AG-TAGGCCAAGTCTTCATCGGGCAGGTTGCGTTGGTTGCG-CTCGGCGT 869585 Query 139979 CATCTCCTTGGCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGC 140037 | || ||||||| ||||||||| || | |||||||| ||||| || || ||||| | Sbjct 869586 C--CTTCTTGGCCAGCTCGATGAA-ATGGGTGCCGATGGCATTGCCCACCCCACGCGAAC 869642 Query 140038 CCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGT 140097 | ||||| ||||| | ||| || | | |||||| |||||||| ||||||||||||| Sbjct 869643 CGGAGTGCAGCATGAACCACACCGCCCCTTGCTCGTCCAGGCAGACTTCGATGAAGTGGT 869702 Query 140098 TGCCGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAGGGTCTTGTACT 140157 | || |||| |||||||| || | | |||||| |||||| ||| | || | Sbjct 869703 TACCCGTCCCCAAAGTGCCCAGGTGTTTGCGGTTGTTGGTGTTCTTCAGGCGCGGGTGCA 869762 Query 140158 TGTCGCAGAGCTTCTCGAAC----CGGGCTTCCAGGCCC-GAGTCGACCCACTTGCGCAT 140212 ||||| ||| |||||| | | | | ||||| || | |||| | | Sbjct 869763 GCTCGCACAGCGCGTCGAACTCATCAGCCAGCGTGGCCCAGATCTGGTCCAC-----CGT 869817 Query 140213 GATCGAGTTCGGGATGCC-GCTACGCCCGTTCCAGCCGCCCGACGGACCCGGC---CCGC 140268 | ||| || | | || ||| ||| | || ||| |||| | |||| || Sbjct 869818 G-TCGGGTGGGTTCTCCCAGCT--GCCGGGGTCACGGCCCCCACGG-CGCGGCGAGAAGC 869873 Query 140269 CGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGGTCCG 140328 ||||||| ||||| | ||| || || ||||| | | | | |||||||||||| Sbjct 869874 CGTGCGGCACGGCCTTCTCAATGGCCGCACGCAGTGGGCCTAAGTTGTCGGGCAGGT--- 869930 Query 140329 AGGCCTTCAGCG----AGGTGCGC---ACGGCCATCATGCCGCAGCCGATGTCCACGCCC 140381 |||||||| ||||| | | |||||||| |||||||| ||||| || ||| Sbjct 869931 ----CTTCAGCGCGCAAGGTGGTCTTGGCCGCCATCATTCCGCAGCCAATGTCTACTCCC 869986 Query 140382 ACGGCCGCCGGGATGATGGCGCCCTT---GGTCGGGATCACCGAGCCCACGGTCGAGCCG 140438 || |||||||||||||||| |||| |||||| | |||||||||||| || | || Sbjct 869987 ACCGCCGCCGGGATGATGG---CCTTGAAGGTCGGCACCACCGAGCCCACCGTGGCACCA 870043 Query 140439 ATGCCCATGTGGACGTCCGGCAT 140461 || |||| ||| ||||| ||||| Sbjct 870044 ATACCCAAGTGCACGTCGGGCAT 870066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715614950400000