Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq2224 318 8e-82 >seq2224 Length=1872321 Score = 318 bits (352), Expect = 8e-82 Identities = 703/1043 (67%), Gaps = 35/1043 (3%) Strand=Plus/Plus Query 137199 TGGCCTAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCT 137258 || |||| ||||||||||| | || |||||||| || || || | ||||| | ||||| Sbjct 868983 TGTCCTACCCCTTCACGCACACCACCTGCTTGAGTGTATGCACCACCTCCACCAAGTCCT 869042 Query 137259 TCTGGGCCTCCATGACCGCGTCGNNNNNNNNNNNNNNNNNNNNNATTTCGTCGATCACGC 137318 ||| ||| |||| ||||||||| ||||||||||||||| Sbjct 869043 GCTGCGCCGCCATCACCGCGTCGATGTCTTTGTAGGCCATGGGGATTTCGTCGATCACGG 869102 Query 137319 CGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGAGTGAAGG 137378 | |||| |||||||| ||||| || | ||||| | ||| ||||| |||| ||||| Sbjct 869103 CTTCGTCTTTGCGGCATTCCACACCGGCCGTGGCTTGGATGTGGTCGTCCACGGTGAACA 869162 Query 137379 TCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACG 137438 || |||||||| ||| || |||| |||||||||||||| ||| | | || | Sbjct 869163 TCTTCTTGGCCTTGGTGCGGCTCATCACGCGGCCCGCGCCGTGGCTGCA-GCTCTCAAAG 869221 Query 137439 AGT-CCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATG 137497 | ||| |||||| |||||||||||||||| || ||||| ||| |||||| Sbjct 869222 CTTTCCGGGTTGCCCAGGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCCGGGATG 869281 Query 137498 ATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCG 137557 || || | || | |||||| || |||||||||||||||||||||||| || || Sbjct 869282 ATGCCCAGCTCGCCCTTCTTAGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCTTCA 869341 Query 137558 TCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTC 137617 | |||||| || | ||| || ||||||||||||||||||||||| || ||| || | Sbjct 869342 CCAAAGTGGCGCTCTTGCTGCACATAGTTGTGGTGGCAGTTCACCGCCTCGATGTGCGAC 869401 Query 137618 TTGAACG----GCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCAT 137673 | |||| | | | || | ||| || ||| | | || | ||||||||| Sbjct 869402 TCAAACGGTTTGGTGATGACCTGTCGCACG-GTGG---CAATGAGGTTGGCCATCATCAC 869457 Query 137674 CTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAA 137733 |||||||| | |||| || | ||| |||| | || || ||| |||||| || Sbjct 869458 TTCGCGGTTACGCTGCGCAAACTTCTGCGCCCAACCCACCGCGCGCACATAGTCGCCAAA 869517 Query 137734 CTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACG 137793 | | || | || || || | || | ||| | || || | ||||| || | Sbjct 869518 GTACTGCGCCCCCTCTTCGAAGTAGGCCAAGTCTTCATCGGGCAGGTTGCGTTGGTTGC- 869576 Query 137794 GCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG-GCCGATGGTGTTGCCGACGC 137852 || | || || || ||||||| ||||||||| ||| | |||||||| ||||| || | Sbjct 869577 GCTCGGCGTC--CTTCTTGGCCAGCTCGATGAA-ATGGGTGCCGATGGCATTGCCCACCC 869633 Query 137853 CGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGA 137912 | ||||| || ||||| ||||| | ||| || | | |||||| |||||||| |||| Sbjct 869634 CACGCGAACCGGAGTGCAGCATGAACCACACCGCCCCTTGCTCGTCCAGGCAGACTTCGA 869693 Query 137913 TGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCG 137972 |||||||||| || |||| |||||||| || | |||||| ||||||||| Sbjct 869694 TGAAGTGGTTACCCGTCCCCAAAGTGCCCAGGTGTTTGCGGTTGTTGGTGTTCTTCAGGC 869753 Query 137973 CCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCA----GGCCCGAATC-GACCCA 138027 ||||| | |||||| ||| ||||||| | ||| ||||| ||| | ||| Sbjct 869754 GCGGGTGCAGCTCGCACAGCGCGTCGAACTCATCAGCCAGCGTGGCCCAGATCTGGTCCA 869813 Query 138028 CTTGCGCAGGATCGAGTTGGGGATGCC-GCTGCGCCCGTTCCAGCCGCCCGACGGACCCG 138086 | | ||| || || | || ||||| || | || ||| |||| | || Sbjct 869814 ------CCGTGTCGGGTGGGTTCTCCCAGCTGCCGGGGTCACGGC--CCCCACGG-CGCG 869864 Query 138087 GC---CCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGAC-AGGCTGTCG 138142 || ||||||||| ||||| | ||| || || || || | || | | | ||||| Sbjct 869865 GCGAGAAGCCGTGCGGCACGGCCTTCTCAATGGCCGCACGCAG-TGGGCCTAAGTTGTCG 869923 Query 138143 GGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACG 138202 || ||||| ||| || | |||| | |||||||||| |||||||| ||||| || Sbjct 869924 GGCAGGTCTTCAGCGCGCAAGGTGGTCTTGGCCGCCATCATTCCGCAGCCAATGTCTACT 869983 Query 138203 CCGACGGCGGCCGGGATGATCGC 138225 || || || ||||||||||| || Sbjct 869984 CCCACCGCCGCCGGGATGATGGC 870006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709561912640000