Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq2224 280 2e-70 >seq2224 Length=1872321 Score = 280 bits (310), Expect = 2e-70 Identities = 691/1041 (66%), Gaps = 31/1041 (3%) Strand=Plus/Plus Query 135963 TGGCCTAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCT 136022 || |||| ||||||||||| | || |||||||| || || || | ||||| | ||||| Sbjct 868983 TGTCCTACCCCTTCACGCACACCACCTGCTTGAGTGTATGCACCACCTCCACCAAGTCCT 869042 Query 136023 TCTGGGCCTCCATGACCGCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGC 136082 ||| ||| |||| |||||||| |||| Sbjct 869043 GCTGCGCCGCCATCACCGCGTCGATGTCTTTGTAGGCCATGGGGATTTCGTCGATCACGG 869102 Query 136083 CGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGG 136142 | |||| |||||||| ||||| || | ||||| | ||| ||||| |||| |||||| Sbjct 869103 CTTCGTCTTTGCGGCATTCCACACCGGCCGTGGCTTGGATGTGGTCGTCCACGGTGAACA 869162 Query 136143 TCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACG 136202 || |||||||| ||| || |||| |||||||||||||| ||| | | || | Sbjct 869163 TCTTCTTGGCCTTGGTGCGGCTCATCACGCGGCCCGCGCCGTGGCTGCA-GCTCTCAAAG 869221 Query 136203 AGT-CCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATG 136261 | ||| ||||||| |||||||||||||||| || ||||| ||| |||||| Sbjct 869222 CTTTCCGGGTTGCCCAGGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCCGGGATG 869281 Query 136262 ATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCG 136321 || || | || | |||||| || |||||||||||||||||||||||| || || Sbjct 869282 ATGCCCAGCTCGCCCTTCTTAGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCTTCA 869341 Query 136322 TCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTC 136381 | |||||| || | ||| || ||||||||||||||||||||||| || ||| || | Sbjct 869342 CCAAAGTGGCGCTCTTGCTGCACATAGTTGTGGTGGCAGTTCACCGCCTCGATGTGCGAC 869401 Query 136382 TTGAACGG---CGGCAGGCCCGACGCTCGCATGGCCTCCAGGACCCGGACCATCATCATC 136438 | ||||| | | | | | ||||| || | | || | ||||||||| Sbjct 869402 TCAAACGGTTTGGTGATGAC---CTGTCGCACGGTGGCAATGAGGTTGGCCATCATCACT 869458 Query 136439 TCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAAC 136498 |||||||| | |||| || | ||| |||| | || || ||| |||||| || Sbjct 869459 TCGCGGTTACGCTGCGCAAACTTCTGCGCCCAACCCACCGCGCGCACATAGTCGCCAAAG 869518 Query 136499 TCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTACGCCCGTCACGG 136558 | | || | || || || | || | ||| | || || | || || || | | Sbjct 869519 TACTGCGCCCCCTCTTCGAAGTAGGCCAAGTCTTCATCGGGCAGGTTGCGTTGGTTGC-G 869577 Query 136559 CGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG-GCCGATGGTGTTGCCGACGCC 136617 | | || || || ||||||| ||||||||| ||| | |||||||| ||||| || || Sbjct 869578 CTCGGCGTC--CTTCTTGGCCAGCTCGATGAA-ATGGGTGCCGATGGCATTGCCCACCCC 869634 Query 136618 GCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGAT 136677 ||||| || ||||| ||||| | ||| || | | |||||| |||||||| ||||| Sbjct 869635 ACGCGAACCGGAGTGCAGCATGAACCACACCGCCCCTTGCTCGTCCAGGCAGACTTCGAT 869694 Query 136678 GAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGC 136737 ||||||||| || |||| |||||||| || | |||||| ||||||||| Sbjct 869695 GAAGTGGTTACCCGTCCCCAAAGTGCCCAGGTGTTTGCGGTTGTTGGTGTTCTTCAGGCG 869754 Query 136738 CGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCCGAGTCGACCCA---CT- 136793 ||||| | |||||| ||| |||||| | | || ||| | || | |||| || Sbjct 869755 CGGGTGCAGCTCGCACAGCGCGTCGAA---CTCATC--AGCCAGCGT-GGCCCAGATCTG 869808 Query 136794 -TGCGCAGGATCGAGTTGGGGATGCC-GCTGCGCCCGTTCCAGCCGCCCGACGGACCCGG 136851 | | | | ||| || || | || ||||| || | || ||| |||| | ||| Sbjct 869809 GTCCACCGTGTCGGGTGGGTTCTCCCAGCTGCCGGGGTCACGGC--CCCCACGG-CGCGG 869865 Query 136852 C---CCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGCGAGGCTGTCGGG 136908 | ||||||||| ||||| | ||| || || || || | | | | ||||||| Sbjct 869866 CGAGAAGCCGTGCGGCACGGCCTTCTCAATGGCCGCACGCAGTGGGCCTAAGTTGTCGGG 869925 Query 136909 AAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCC 136968 ||||| ||| || | |||| | |||||||||| |||||||| ||||| || || Sbjct 869926 CAGGTCTTCAGCGCGCAAGGTGGTCTTGGCCGCCATCATTCCGCAGCCAATGTCTACTCC 869985 Query 136969 GACGGCGGCCGGGATGATCGC 136989 || || ||||||||||| || Sbjct 869986 CACCGCCGCCGGGATGATGGC 870006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701205393280000