Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1448 113 8e-20 seq10358 107 4e-18 seq15668 86.0 1e-11 >seq1448 Length=175156 Score = 113 bits (124), Expect = 8e-20 Identities = 135/183 (74%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 48091 CTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAA 48150 ||| || || |||||| ||| | ||| || | | |||||||||||| |||||| Sbjct 97706 CTCAGACGGCTTGTTGACCAGCAGTTTG---TACATGAGGCAGGCAAAGTCAGTGTGCAG 97762 Query 48151 GCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTG 48210 ||| ||||| ||| ||||||| ||||| || ||||| ||||||| || | || Sbjct 97763 GCCCTCGTCACGGGAGATGAGCTCGTTGCTAAAAGTCAGACCCGGCATGAGGCCTCGCTT 97822 Query 48211 TTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270 || ||||||||||||| || ||||| || |||||||| || |||||||| || || || Sbjct 97823 CTTCAGCCAGAAAATTGAGGCAAAAGAACCCGAGAAGAAAATCCCCTCCACGGCGGCAAA 97882 Query 48271 CGC 48273 ||| Sbjct 97883 CGC 97885 Score = 100 bits (110), Expect = 5e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 48320 AGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTC 48379 || |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| | Sbjct 99394 AGGGCCCAGTCTGCCTTCTTCTTGATGCAGGGCATGGTCTCGATGGCGTTAAAGAGGCGC 99453 Query 48380 TTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGC 48439 | || | | ||| || | ||||| ||| ||| ||||||||||||||| Sbjct 99454 GTCTGCTGGGCGGTGTCGGCGATGTAGGTGTTGATCAGGAGGCTGTACATCTCAGAGTGG 99513 Query 48440 ACATTCTCTATAGCGATCTGGAACCCGTAGAAG 48472 | ||||| || ||||||||||| ||||||||| Sbjct 99514 ATGTTCTCCATGGCGATCTGGAAGCCGTAGAAG 99546 >seq10358 Length=34033 Score = 107 bits (118), Expect = 4e-18 Identities = 134/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 48091 CTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAA 48150 ||| || || |||||| ||| | ||| || | | |||||||||||| |||||| Sbjct 71 CTCAGACGGCTTGTTGACCAGCAGTTTG---TACATGAGGCAGGCAAAGTCAGTGTGCAG 127 Query 48151 GCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTG 48210 ||| || || || ||||||| ||||| ||| ||||| ||||||| || | || Sbjct 128 GCCCTCATCACGTGAGATGAGCTCGTTGCTGAAAGTCAGACCCGGCATGAGGCCGCGCTT 187 Query 48211 TTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270 || ||||||||||| | || ||||| || |||||||| || ||||||||||| || || Sbjct 188 CTTCAGCCAGAAAATCGAAGCAAAAGATCCCGAGAAGAAAATCCCCTCCACTGCGGCAAA 247 Query 48271 CGC 48273 ||| Sbjct 248 CGC 250 >seq15668 Length=647317 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||| ||| |||||||| ||||| || || ||||| |||||| || ||||||||| Sbjct 300934 GTGTAGGCCTCAATGCTCTCATTGTTGCCGAGGATCTGAGCAGTGGAAGCAGTGGGCATG 300993 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 || |||| |||||| ||||| | || ||||| Sbjct 300994 GGCGCCAGCAGGAGGCTGTTACGTACGCCGTG 301025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931323205120000