Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1448 98.7 2e-15 seq15668 87.8 3e-12 >seq1448 Length=175156 Score = 98.7 bits (108), Expect = 2e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || || ||||| || |||||||| || || ||| ||||| ||||| | || |||||| Sbjct 97888 GTGGCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTTTGCCTCAATTTTCTGG 97829 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC-CAACGAGCTCATCAGCAGGGA 26003 || ||| || || |||||| || ||| |||||| ||||||||||||| | | || Sbjct 97828 CTGAAGAAGCGAGGCCTCATGCCGGGTCTG-ACTTTTAGCAACGAGCTCATCTCCCGTGA 97770 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||| || |||| || ||||||||||| | |||| Sbjct 97769 CGAGGGCCTGCACACTGACTTTGCCTGCCTCATGTACA 97732 >seq15668 Length=647317 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||||||||| |||||||||||| ||||||| ||| | ||||||||| ||||| ||||| Sbjct 304318 GGGACACATGAGACTCCAGTGCGTGTTGTCAGCGACACGCTGCATGAACAGGTCAGGGAT 304377 Query 222058 CCACAGCGCCTGAAAGAGATC 222078 |||||| || | |||||||| Sbjct 304378 CCACAGGGCATAGAAGAGATC 304398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928635809920000