Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1447 127 2e-24 >seq1447 Length=1029730 Score = 127 bits (140), Expect = 2e-24 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 138174 TGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAAT 138233 ||||| || |||| ||||||||| || || ||||||||||||||||| ||||| || Sbjct 592108 TGTTTGGCAACACAAATAGGACCAACTCCTGGACCTCCACCTCCATGAGGAATCGCAAAG 592167 Query 138234 GTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCT 138293 || || || || ||||| ||||| |||||||| ||| || || || | || ||| Sbjct 592168 GTTTTGTGCAAGTTTAGGTGACAAACATCTGCCCCAATGTTGGCAGGATTGGTAAGGCCT 592227 Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 || || ||||| | || || || || | ||| ||||| || ||||| | |||| || Sbjct 592228 ACTTGGGCATTCATGTTGGCGCCGTCCATATAAACCTGTCCTCCATTTTGGTGAATGAGT 592287 Query 138354 TTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATA 138413 | || | | | || | | ||||| ||||||| |||||||||||| |||| ||| Sbjct 592288 TCGGTTACTTCTTTAATTTCTTCATCAAAAACACCATAAGTCGATGGATAAGTAACCATC 592347 Query 138414 ATACA 138418 | ||| Sbjct 592348 AAACA 592352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578868125360000