Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq9457 248 1e-60 seq1 196 6e-45 seq8969 114 2e-20 seq13448 87.8 2e-12 seq11737 86.0 8e-12 seq1447 86.0 8e-12 >seq9457 Length=55282 Score = 248 bits (274), Expect = 1e-60 Identities = 510/760 (67%), Gaps = 25/760 (3%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || ||||||||| |||| || | | |||||||| | || |||||||| ||||| Sbjct 33843 CCAGTAGCAATAACATAATCTTCCGCCACGTCTTGTTGCAAGATCAACCACATGGCCTCA 33784 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 | || ||| ||||||| |||||||| | ||||| |||||||| ||| | | ||| Sbjct 33783 ATGTAGTCTTTGGCATGACCCCAGTCTCTTTTGGCATCGAGATTTCCAAGAAACAGACAT 33724 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTT 47967 |||| || |||| | ||| | | ||| || || || ||||| || || || ||| Sbjct 33723 TCTTCCTGACCTAAGGCTATTTGTGAAACTGCCCTAGTGATTTTACGTGTCACGAAGGTT 33664 Query 47968 TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTAT 48027 || || | || ||||| || || || || || ||| | || |||||||| ||| Sbjct 33663 TCGCCTCTCAAAGGCGATTCGTGGTTGAATAGGATGCCATTGCAAGCATACATGTTGTAA 33604 Query 48028 GATTCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAG 48085 | ||| |||||||| || || |||||||| ||||| | ||| || || ||||||||| Sbjct 33603 GCTTCGCGATAGTTTACTGTA--ATCCAGTAGCCATATAATTTGGCTACTGCATAAGGAG 33546 Query 48086 AACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTT 48145 | | |||||| || || ||||| || | ||| || |||||| || || || || | Sbjct 33545 ACCTTGGATAAAATGGAGTGGTTTCAGACTGCGGCACCTCTTGTACTAAGCCGTATAGCT 33486 Query 48146 CACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCT 48205 || ||| || |||||||| || ||| | || ||| | | || | || || | Sbjct 33485 CAGAGGTAGAGGCTTGATAAATGCGACATGTTTCGGTCATTCCCAACAGCCTCACAGCTT 33426 Query 48206 CAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACG 48265 | | | || | || || || | || | | | ||||| || || ||||| Sbjct 33425 CCAAAATCCTTAATGTACCGATTCCGTCCACATTAGCGGTATATTCAGGTTCGTCAAAAC 33366 Query 48266 AAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAA 48325 || ||||| || | |||||||| ||||||||||| || |||| || | ||||| Sbjct 33365 TTACTTTTACGTGCGACATAGCCCCAAGGTTATAAATCTCGTCGGGTTTTACTTCCTGAA 33306 Query 48326 TAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATT------ 48379 ||| | | | ||| || ||||| | ||||| |||||||| ||||| |||| Sbjct 33305 TAATACGAATGATATTGGTGGAGTCGCTCAAGTCACCATAATGTAATTTGAATTTTACAT 33246 Query 48380 ------------GATCAT---AAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCC 48424 |||| | ||| ||||||||||| | ||||| | || ||||||| Sbjct 33245 TAGTTTCGTGAAGATCTTTGTAAAGGTGATCAATTCGGTCGGTATTGAACAATGAAGCCC 33186 Query 48425 GACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAAC 48484 | ||||||||||||||||| || |||| |||||||| |||||| || || | | Sbjct 33185 TTCTTTTTATACCATGAACCTCATAACCTTTTTGAAGAAGAAATTCTGCCAAATAGGCTC 33126 Query 48485 CATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTTCAT 48524 |||| || || || | ||| || ||||| || |||||| Sbjct 33125 CATCCTGACCGGTTACACCTGTAATTAATGCTTTTTTCAT 33086 >seq1 Length=2207822 Score = 196 bits (216), Expect = 6e-45 Identities = 292/412 (71%), Gaps = 12/412 (3%) Strand=Plus/Minus Query 47761 ACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCT 47820 ||||| | || ||| || ||| | || |||||||| || || || || |||| || Sbjct 1991927 ACAAAATCGCGCACACTGTACTGAATGCCAGTGGCAATTACGAAGTCCTCTGGTTTGTCC 1991868 Query 47821 TGTTGAAGCATTAACCACATAGC--CTCGACATAATCTCTGGCATGTCCCCAGTCACGAA 47878 || || ||||||| ||| | || ||||||||| ||| |||||||||||||||| || Sbjct 1991867 TGCTGCAGCATTAGCCA--TTGCATCTCGACATAGTCTTTGGCATGTCCCCAGTCTCGTC 1991810 Query 47879 GTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT---- 47934 | ||||| | ||| || | ||| | || | || | || || ||| || Sbjct 1991809 GCGCATCCAAATTACCCAAATACAGGCATTTCTGGGTGCCA----AGCTTGATTCGCGCC 1991754 Query 47935 AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTA 47994 || || | ||||||||| ||||||||||| || || || || | || ||||| || ||| Sbjct 1991753 AACGCCCGTGTAATCTTGCGAGTTACAAACGTCTCTCCCCGAATAGGGGATTCGTGGTTA 1991694 Query 47995 AAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAG 48054 || | || ||| | ||||| |||||||| || | ||| | |||||| |||||| Sbjct 1991693 AACAAGATGCCATTGCAGGCGTACATTCCATAGGCTTCTCTGTAGTTCACAGTAATCCAG 1991634 Query 48055 TACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTC 48114 || ||||| || || |||||| |||| |||||||| || ||||||||||| || ||| | Sbjct 1991633 TAGCCATACAGCTTCGCAACAGCATATGGAGAACGGGGGTAGAAAGGTGTAGTTTCTCGC 1991574 Query 48115 TGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 || ||||||||||| || || || ||||| || || ||||| |||| Sbjct 1991573 TGCGGAGTCTCTTGAACAAGTCCGTACAGTTCTGATGTCGAAGCTTGGTAGA 1991522 >seq8969 Length=73153 Score = 114 bits (126), Expect = 2e-20 Identities = 191/276 (69%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 46967 ATGATATTTTGCAATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATT 47026 |||| |||| ||||| || || | ||||||||| | | ||||| | || || || Sbjct 64654 ATGAAATTTCCTTATCATGGCCGGCAACACATGCGAATTGTTGAGGTCGTAGTTGTCGTT 64595 Query 47027 TGGACCATATAGGTTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTA 47086 |||||||||||| || || ||||||| || || ||| ||||||| || | | | || Sbjct 64594 TGGACCATATAGATTGGTGGGCATCACCGAAATGAAATTGCATCCATATTGTTCACGATA 64535 Query 47087 TGCCTGACACATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTC 47146 |||| |||||| || || || || || || || || ||||||| || || | ||||| Sbjct 64534 GGCCTCACACATTTTTATGCCGGCTATTTTGGCTATGGCATAAGGCTCGTTGGTGGGTTC 64475 Query 47147 AAGAGGACCACTCATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAAT 47206 || ||| | | || ||| || || | | || || | | |||||||||||| Sbjct 64474 GAGCAAGCCAGTTAATAAATAATCCTCTTTTAATGGCTGAGGAGCCATTTTTGGATAAAT 64415 Query 47207 GCAGGAAGAACCAAGAAATAAAAGTTTCTTAACACC 47242 |||||| ||||| | ||| | ||||| || || || Sbjct 64414 GCAGGACGAACCCAAAAACATCAGTTTTTTGACTCC 64379 >seq13448 Length=225520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGG-AGGCTTTCACCT-CGCTGGTTTTCAAGACCA 53541 ||||| |||||||||||||||||||| | | |||| ||| |||| ||||||||||| | Sbjct 108826 GCGGAAGCGGTGAGATTCGAACTCACGGTAAGGTTTCCCCTACGCTAGTTTTCAAGACTA 108885 Query 53542 GAGCCATAAACCACTCGACCAC 53563 ||||| ||||||||||| |||| Sbjct 108886 GAGCCTTAAACCACTCGGCCAC 108907 >seq11737 Length=277544 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 ||||||||| |||| |||||||| |||| |||| | ||||| |||||||||||| ||| | Sbjct 219502 TGGAGAATATCGGAGTCGAACCGATGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 219561 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 219562 TGAGCTAATCCCCC 219575 >seq1447 Length=1029730 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 ||||||||| |||| |||||||| |||| |||| | ||||| |||||||||||| ||| | Sbjct 756871 TGGAGAATATCGGAGTCGAACCGATGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 756812 Query 53800 TGAGCTAATTCCCC 53813 ||||||||| |||| Sbjct 756811 TGAGCTAATCCCCC 756798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665344663760000