Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq15668 102 1e-16 seq9661 93.3 8e-14 >seq15668 Length=647317 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| |||||||||||||||||||| || || || ||||| ||||| ||| Sbjct 380313 TGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCTTTGTCTTGAATT 380254 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| ||||| || | || || | ||| ||||| | ||||| || || ||| Sbjct 380253 TTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTAATTGTCTTCCCA 380194 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | ||||| | || |||||||| || Sbjct 380193 GTGAGAGTTTTCACAAAGATCTGCATCTT 380165 >seq9661 Length=48700 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | ||| || || | || | ||| || || || || || Sbjct 31816 ATACCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 31875 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| ||||| || ||||||||||| || | | ||||||||| || Sbjct 31876 GAAAGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGA 31935 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || || || || ||||| || | || Sbjct 31936 GGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCC 31995 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||||| || ||||| | || || | ||| ||||||||| Sbjct 31996 ACCTCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 32046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904932344400000