Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq13448 183 1e-41 >seq13448 Length=225520 Score = 183 bits (202), Expect = 1e-41 Identities = 191/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||||||||| |||||||||||||| ||||| ||||||| ||| |||||||| | Sbjct 21231 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCCGGGTTCAAGAAGCGCTCGAACAG 21290 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || || ||||||||| |||||||||||| || | ||||| |||||||| || Sbjct 21291 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCAGCAGCGCATAGGCCACCAGCGAGCC 21350 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 || | |||||||| || || || ||| | |||||| || || ||||| |||||| Sbjct 21351 TGCACCCGAGCCTCGGCCCGGCCCCACCGGGCAGCCGTTTTCTTTGGCCCACTTGATGAA 21410 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40741 ||||| ||||| | |||||| ||||||||||||| |||||| ||| | ||| | Sbjct 21411 GTCCGAGACGATCAAGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTCAGCTCAAA 21470 Query 40742 CTGGAGCTGCT 40752 || ||| ||| Sbjct 21471 CTCCAGCCGCT 21481 Score = 123 bits (136), Expect = 8e-24 Identities = 216/310 (70%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 ||||| | | ||||||| | ||||| ||| ||||| | ||| | || || | || Sbjct 20083 GCCGCGAAGAACTCGGCCGTAAAGTGCACCTTGAGCCAGCCGGTGTGATAGGCCAGCAGC 20142 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 ||| ||||| | ||||| |||||||||| ||||||| |||||| ||| || ||| Sbjct 20143 GAGTAAGCCGCAGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCG 20202 Query 39471 CACACTGCCTGGA---TGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAG 39527 |||| | | | |||| |||| || | | || ||| ||| ||||| ||||| Sbjct 20203 AACACCTCGTCGGCCTTGGCCTCGTCGATGTTGT-TGGC-CGC-CGCGCCCTTGCGGAAG 20259 Query 39528 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39587 | || | || ||||| |||| | ||||||||||||||| |||||||| |||| | Sbjct 20260 ATGGCGCGGTGCTCGGCCATCTCCTCCGCCTTCTTCTTGCCCATGGCCCGGCGCAGCATG 20319 Query 39588 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGG 39647 ||||| || ||| |||| ||| ||| ||||| || || | ||||||||| ||| Sbjct 20320 TCGGCGCCGCCCAGGCTGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCTTGG 20379 Query 39648 TAGATGATGA 39657 |||| |||| Sbjct 20380 TAGACCATGA 20389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163849769624000