Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq13448 183 1e-41 >seq13448 Length=225520 Score = 183 bits (202), Expect = 1e-41 Identities = 191/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||||||||| |||||||||||||| ||||| ||||||| ||| |||||||| | Sbjct 21231 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCCGGGTTCAAGAAGCGCTCGAACAG 21290 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || || ||||||||| |||||||||||| || | ||||| |||||||| || Sbjct 21291 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCAGCAGCGCATAGGCCACCAGCGAGCC 21350 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 || | |||||||| || || || ||| | |||||| || || ||||| |||||| Sbjct 21351 TGCACCCGAGCCTCGGCCCGGCCCCACCGGGCAGCCGTTTTCTTTGGCCCACTTGATGAA 21410 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 41029 ||||| ||||| | |||||| ||||||||||||| |||||| ||| | ||| | Sbjct 21411 GTCCGAGACGATCAAGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTCAGCTCAAA 21470 Query 41030 CTGGAGCTGCT 41040 || ||| ||| Sbjct 21471 CTCCAGCCGCT 21481 Score = 118 bits (130), Expect = 3e-22 Identities = 215/310 (69%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 39639 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39698 ||||| | | ||||||| | ||||| ||| ||||| | ||| | || || | || Sbjct 20083 GCCGCGAAGAACTCGGCCGTAAAGTGCACCTTGAGCCAGCCGGTGTGATAGGCCAGCAGC 20142 Query 39699 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39758 ||| ||||| | ||||| |||||||||| ||||||| |||||| ||| || ||| Sbjct 20143 GAGTAAGCCGCAGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCG 20202 Query 39759 CACACTGCCTGGA---TGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAG 39815 |||| | | | |||| |||| || | | || ||| ||| ||||| ||||| Sbjct 20203 AACACCTCGTCGGCCTTGGCCTCGTCGATGTTGT-TGGC-CGC-CGCGCCCTTGCGGAAG 20259 Query 39816 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39875 | || | || ||||| |||| | ||||||||||||||| |||||||| |||| | Sbjct 20260 ATGGCGCGGTGCTCGGCCATCTCCTCCGCCTTCTTCTTGCCCATGGCCCGGCGCAGCATG 20319 Query 39876 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGG 39935 ||||| || ||| |||| ||| ||| ||||| || || | ||| ||||| ||| Sbjct 20320 TCGGCGCCGCCCAGGCTGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCTTGG 20379 Query 39936 TAGATGATGA 39945 |||| |||| Sbjct 20380 TAGACCATGA 20389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164809564424000