Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4313 114 4e-20 seq11737 104 7e-17 seq11303 89.7 2e-12 >seq4313 Length=100589 Score = 114 bits (126), Expect = 4e-20 Identities = 162/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || |||||||||||||| ||||| ||||||| |||||||| |||||| | | ||| Sbjct 23703 GTCTTGACAGCTGTATCAATGAGACCTTCACGACCTCCCATAGCGTGGAAGTAGAACTCA 23762 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 || ||| || || | | | ||| |||| ||||| || |||| ||| || | Sbjct 23763 GAGGG-CGTGAGGCCGGCGAGGTATGAGTTCTCTACGAAGCCTCGCGACTCAGGACCGTA 23821 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| | ||||| |||||||| | || |||| | ||||| ||||| || Sbjct 23822 GTCGTCCTTGATGAAGTGCGGCAGGGTGCGCTTGCGGAAGCCAAAGGGGATTCGCTTGCC 23881 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATAT 302842 |||||||||||||| |||| ||||| || | ||| | ||||| Sbjct 23882 TTCAACGTTCTGCTGCCCCACGCACGCGATAACCTG-GCAATAT 23924 >seq11737 Length=277544 Score = 104 bits (114), Expect = 7e-17 Identities = 217/319 (68%), Gaps = 6/319 (2%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| | ||||| ||||| || || || || | | | || || |||| | | || | Sbjct 178179 TACCGATGGCATCTATTTCATCGATAAAGATAATAGAAGGCGATTTTTCTTTTGCCTGTT 178120 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 || | |||||||| | || || |||| || ||| ||||||| ||||| || || Sbjct 178119 TGAAAAGGTCTCTTACCCTTGAGGCACCAACCCCTACAAACATTTCCACAAAATCGGATC 178060 Query 289148 CGGATA-CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | | ||| || | || || ||||| || |||||||| | || || || || Sbjct 178059 CCGAAAGCGAGAAAAAAGGA-ACTTTAGCTTCACCCGCTACTGCTTTGGCAAGTAGGGTT 178001 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || |||||||| || || || | || || |||| || |||| |||| | ||| || Sbjct 178000 TTTCCTGTTCCTGGAGGCCCTACCAAAAGGGCTCCTTTGGGTATTTTTCCACCA--AGTT 177943 Query 289267 T--TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | | |||||||||||| | ||||||||| || ||||| || | ||| | ||| || Sbjct 177942 TGGTGTATTTCTCAGGGTTTTTTAAAAATGAAACGATTTCTTCTATTTCTTCTTTGGCTC 177883 Query 289325 CATCACATCCTGCTACATC 289343 | || ||| |||||||| Sbjct 177882 CTTCGAGTCCAGCTACATC 177864 >seq11303 Length=294554 Score = 89.7 bits (98), Expect = 2e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 252550 TTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGA 252609 ||||| | || | ||| | || ||||| ||||||||||| |||||||| || |||||| Sbjct 240478 TTTGTGATGTAGACACCCATAGCTTGCTTACCCATAGCACTTTGGTAAGTGTTCCTGGGA 240419 Query 252610 GACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA-ACACCGAAGATAGTGCTTGG 252668 |||||||||| || ||||||||||| ||| | ||| || || ||||| || | Sbjct 240418 GACTGATTGTGATCTGGGAAAGGAAT-AATGGAGGCACACACGCCCAAGATCATGGCGGT 240360 Query 252669 GTGAATTTCACAGTGACTGTA 252689 |||||| || ||||| |||| Sbjct 240359 GTGAATCTCGCAGTGTGTGTA 240339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471478162066000