Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq13448 174 5e-39 >seq13448 Length=225520 Score = 174 bits (192), Expect = 5e-39 Identities = 189/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||| | Sbjct 21231 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCCGGGTTCAAGAAGCGCTCGAACAG 21290 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || || ||||||||| |||||||||||| || | ||||| |||||||| || Sbjct 21291 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCAGCAGCGCATAGGCCACCAGCGAGCC 21350 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 || | ||||| || || || || ||| | ||||| || || ||||| |||||| Sbjct 21351 TGCACCCGAGCCTCGGCCCGGCCCCACCGGGCAGCCGTTTTCTTTGGCCCACTTGATGAA 21410 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489 ||||| ||||| | |||||| ||||| ||||||| |||||| ||| | ||| | Sbjct 21411 GTCCGAGACGATCAAGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTCAGCTCAAA 21470 Query 40490 CTGGAGCTGCT 40500 || ||| ||| Sbjct 21471 CTCCAGCCGCT 21481 Score = 122 bits (134), Expect = 3e-23 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 39099 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGT 39158 ||||| | | ||||||||| ||||| ||| | ||| | ||| | || || | || Sbjct 20083 GCCGCGAAGAACTCGGCCGTAAAGTGCACCTTGAGCCAGCCGGTGTGATAGGCCAGCAGC 20142 Query 39159 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCC 39218 ||| ||||| | ||||| |||||||||| ||||||| ||||| ||| || ||| Sbjct 20143 GAGTAAGCCGCAGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCG 20202 Query 39219 CACACTGCCTGGA---TGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAG 39275 |||| | | | |||| |||| || | | || ||| ||| ||||| ||||| Sbjct 20203 AACACCTCGTCGGCCTTGGCCTCGTCGATGTTGT-TGGC-CGC-CGCGCCCTTGCGGAAG 20259 Query 39276 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39335 | || | || ||||| |||| | ||||||||||||||| |||||||| |||| | Sbjct 20260 ATGGCGCGGTGCTCGGCCATCTCCTCCGCCTTCTTCTTGCCCATGGCCCGGCGCAGCATG 20319 Query 39336 TCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGG 39395 ||||| |||||| |||| ||| ||| ||||| || || | ||||||||| ||| Sbjct 20320 TCGGCGCCGCCCAGGCTGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCTTGG 20379 Query 39396 TAGA 39399 |||| Sbjct 20380 TAGA 20383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163289889324000