Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-30 >seq1 Length=2207822 Score = 143 bits (158), Expect = 6e-30 Identities = 314/459 (68%), Gaps = 11/459 (2%) Strand=Plus/Minus Query 8363 AATGCGCAGCATCAACTTGCCGGACGCGGGCTTCTGTGGCTCGCGCCCG-GCGCGTTTGC 8421 || ||| ||||| | |||||| ||||| | ||| | |||| | ||| || | ||||| Sbjct 153926 AACGCGAAGCATGAGCTTGCCTGACGCCGTCTTTTCCGGCTTGACCCCTTGCTC-TTTGC 153868 Query 8422 AGTCGTCAAGGTAGTGATCGACGGCCGCATGAAAGTC-TCGCGACAGTTCGTCCACCGTC 8480 ||||| | ||| ||| |||| ||| || ||| | |||||| ||||| ||||||| Sbjct 153867 AGTCGGCCAGGAAGTCCTCGATGGCTCCAGAAAATGCATCGCGA-AGTTCCGCCACCGTT 153809 Query 8481 TCGCCGTGGAAAGTGATCTTGTCATCCACGCCGAGCACGTGGCCGACGAAAATGTTATCG 8540 || || || || ||||| || | || ||| || ||| | || ||||| ||||| ||| Sbjct 153808 TCACCATGAAAGCTGATCATGGCGCGCAGGCCCAGGACGCGACCCACGAAGATGTTGTCG 153749 Query 8541 CGCCCGTCGAAATCGATCCGGGCGAAATATCCTTTGTAAGACATGGCGTTGTTCATGGCT 8600 || | ||||| ||||| ||||| ||| |||||||| |||| ||||||||| Sbjct 153748 CGTTCATCGAACTCGATGCGGGCCGTATAGCCTTTGTAGTTCATGC---TGTTCATGGTG 153692 Query 8601 TGATTCCCATTTCGATAAACCAGT-CGCGCAGATCCTCCACCTGATACCGCTTCGCCTCC 8659 | | ||| | | || | | || | ||||| || || | ||||| ||||| || || Sbjct 153691 TTACTCCTACT-CGTTCCAGCAATTCGCGCGCCTCTTCAATTTGATAGCGCTTGGCTTCT 153633 Query 8660 TTGCCCGGGTGCGGGCGGTGGTGATAGCGGCGGGT-GCCGTTCAGTTCGAAGGCGATGCG 8718 ||||||||||| || || ||| | || | | | ||| | || || || ||| Sbjct 153632 TTGCCCGGGTGAGGCCGATGG-CAACGCCACTGCTCGCCCATGAGAAGGATCTTGACGCG 153574 Query 8719 CGACCCGGCGCCTTCGTGAATTTCGCCGCCGAGCGCGGCGACGAGCGATTCAATATCAGA 8778 || || ||| ||| |||| |||||| || || || || ||||| || || || || Sbjct 153573 AGAGCCTTCGCGTTCATGAACTTCGCCACCAAGACCGATGATCAGCGACTCGATGTCCGA 153514 Query 8779 AAACACGATCCCGCCCAGCGTGGGCTTCGTGAAGATCGC 8817 || |||||| | | ||| ||||| |||||||| || Sbjct 153513 GAAGACGATCGTGGCGGACGTAGGCTTGGTGAAGATGGC 153475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113230191872000