Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq2224 116 5e-21 seq11737 113 6e-20 >seq2224 Length=1872321 Score = 116 bits (128), Expect = 5e-21 Identities = 214/311 (69%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 99593 TTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGCGTC 99652 ||| |||||||| ||||| || ||||| | || ||||| ||||| || ||||| || Sbjct 1212253 TTGCCAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCCAG 1212194 Query 99653 GTATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGGCGATTTCG 99711 || || | |||| |||||| | || |||||| |||| | ||| ||||| |||||| Sbjct 1212193 CTACGCGTTGCTGACCCACATGCTGGCCCAGCAGTGCGACT-TGGACGTGGGTGATTTCA 1212135 Query 99712 TCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGTACTCAGT 99771 ||||||| ||||| || || || || | || || | || || | | || ||| Sbjct 1212134 TCTGGACGGGCGGCGACTGCCACCTCTACACCAATCACTTCGAGCAAGTGCAAACGCAGC 1212075 Query 99772 TAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTATCT 99831 ||| || || || ||| | || ||||| ||||| || ||||| | || |||| Sbjct 1212074 TAGCGCGCACGCCCTTTGCCTACCCGGTGCTGAACATCAAGCGCAAGCCCGCGTCCATCT 1212015 Query 99832 TCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTAAAG 99891 ||||||| |||||||||| ||||| | | ||| | | || || | || || | Sbjct 1212014 TCGACTACGAGTTCGAAGACTTTGAGGTGCTGGAGTACCAGCACCATGCGCCCATCAAGG 1211955 Query 99892 CACCGGTGGCG 99902 ||||||||||| Sbjct 1211954 CACCGGTGGCG 1211944 >seq11737 Length=277544 Score = 113 bits (124), Expect = 6e-20 Identities = 187/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 98926 TCTTTGCGAAAGGTACGCCGAAGAA-AGACCGTACCGGTACAGGCACGCTTTCTATCTTC 98984 || ||| |||||| | || || || |||||| || || || || || ||| || Sbjct 158139 TCCTTGAGAAAGGAA-GCGAAAAAACAGACCGAACAGGCGTGGGAACCCTCAGTATTTTT 158197 Query 98985 GGCCACCAGATGCG-TTTCAACTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTG 99043 || || || ||||| ||| | || || ||||| |||||||| || || ||||| || Sbjct 158198 GGACATCAAATGCGCTTTGATCTCTCA-GAAGGCTTCCCGCTTGTTACCACCAAAAAATG 158256 Query 99044 CCACCTGCGCTCTATTATCCATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCA 99103 ||| | | || ||||| ||||| ||||||| | || || || ||||||||| Sbjct 158257 CCATTTAAGATCGATTATTGTAGAACTTTTGTGGTTTTTAAAGGGTGAAACCAATATCGC 158316 Query 99104 GTACCTGAAAGATAATGGTGTAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCT 99163 || || ||||| || || | ||||||||||||||||||||| ||||||| || || Sbjct 158317 TTATCTCAAAGAAAACAAGGTGAGCATTTGGGACGAATGGGCGGATGAAAATGGGGATCT 158376 Query 99164 CGGTCCGGTATACGGTAAGCAGTGG 99188 ||||| || |||||| |||||| Sbjct 158377 GGGTCCAGTTTACGGTGCCCAGTGG 158401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716475556720000