Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021794.1 Length=71443 Score E Sequences producing significant alignments: (Bits) Value seq1447 96.9 2e-15 >seq1447 Length=1029730 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/230 (71%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 7030 TTCAATTCTCCATCCTTGAATACCGTTAAAGTATTTCGTTTCTCCTTGTGGATTAACCCA 7089 ||| |||||||| ||| ||| | ||| |||||||| | | || | |||||||| ||| Sbjct 297339 TTCTATTCTCCAACCTACAATGCTGTTGAAGTATTTGGCCACGCCCTCTGGATTAATCCA 297398 Query 7090 TTCCCTGCCTCGTAAATTTATGCCAACTTTAACTTTTTG-TCCTACCATGTAGCTGTTTA 7148 ||| || |||| | || ||| | ||| || || || |||| | ||| |||||| Sbjct 297399 TTCTCTTCCTCTAATGTTGATGGAGATTTTCACGTTCTGATCCT-CAGCGTAATTGTTTA 297457 Query 7149 GCACATCACACTTA-TCTTGAACAAACTCAACTAAAATATGCTGAGGATATTGCTCTTCT 7207 | ||| ||||| ||||| ||| || || || || || |||||||||||||||| Sbjct 297458 ATAAATC-CACTTTGTCTTGGGTAAATTCTACCAAGATTTGTTGAGGATATTGCTCTTGG 297516 Query 7208 GTGGTTACGACTAATTCTCTTTTTCTAAATCCGTTACTTCCGAATGTTTG 7257 || | | || | ||||||||||||||| || |||| ||| ||||| Sbjct 297517 GTCATCAGTACCACTTCTCTTTTTCTAAACCC---ACTTGGGAAAGTTTG 297563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228442674392000