Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq1447 132 3e-26 >seq1447 Length=1029730 Score = 132 bits (146), Expect = 3e-26 Identities = 205/288 (71%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 96132 TTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCC 96191 ||||| ||||||| | || |||||| | ||| |||||||| |||||||||||||| Sbjct 642849 TTTAAGTCCTTCTTGAATGATGGACTGAGCAAGTACCGTAGCTGTAGTTGTTCCATCTCC 642908 Query 96192 TACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAA 96251 | |||| ||| | ||| ||||| ||| | |||||| ||||| | |||||||| Sbjct 642909 TGCTTCGTCATTGGCATTAGAGGCTACGCCTTTTACCATTTGCGCACCCATGTTTTCAAT 642968 Query 96252 TGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTG--GA 96309 |||||||||| | |||||| | || ||| ||||| ||||| || || | || || Sbjct 642969 AGGATCTTCTAGCTCGATTTCTTTGGCAACAGAAACACCGTCTTTGGTGATAAGTGGTGA 643028 Query 96310 TTATACTGGTCTAAACCTAGTATAACATTCTTACCTGATGGTCCTAGAGTTACTTTAACT 96369 | | ||| | | || || || | ||| ||||| || |||||||| ||| Sbjct 643029 ACCAAAAGATCT--TTCGATTACTACGTTTCTTCCTTTGGGTCCAAGGGTTACTTTTACT 643086 Query 96370 GCATTAGCTAAAGCATCTACACCTCTCTTTAAG-GCTTCTCTTGATTC 96416 ||||| || | ||||||||||||||| |||||| || ||||| || || Sbjct 643087 GCATTGGCCAGAGCATCTACACCTCT-TTTAAGCGCATCTCTAGACTC 643133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321142333942000