Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15558 123 3e-22 seq9059 107 2e-17 seq1 104 3e-16 seq12004 95.1 1e-13 seq15668 91.5 2e-12 >seq15558 Length=176468 Score = 123 bits (136), Expect = 3e-22 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| || || ||| ||||||| || || |||||||| |||||||| |||||||| | Sbjct 143226 CACTCTGTTCGAGCTGATCCTGGCAGCGAACTACCTGGACATCAAAGGCCTGCTCGACGT 143167 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 |||||| | || ||||||||||||||||||||||| || |||||||| |||||||| Sbjct 143166 CACCTGCAAGACGGTAGCCAACATGATCAAGGGCAAGTCTCCTGAGGAGATACGCAAGAC 143107 Query 1592284 CTTTAACATCAAG 1592296 ||| || |||||| Sbjct 143106 CTTCAATATCAAG 143094 >seq9059 Length=664736 Score = 107 bits (118), Expect = 2e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||||||||| || || || | | ||| || | | |||||| | || |||||||| Sbjct 2890 ACGGCGGTCTGAATTTCCCGGGAGGTGATGGTAGTTCTCTTGTTGTACTGAGCCAGACGC 2831 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||||| | ||||| || | ||||| ||||| ||||| ||||||| ||||| Sbjct 2830 GATGCCTCGGTTGCAATGCGTTCAAAAATGTCATTGACGAACGAATTCATGATTGACATG 2771 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| | |||| || ||| ||||| || ||||| || |||||||||||| Sbjct 2770 GCCTTGCTCGAGACACCAGTGTCAGGGTGGACTTGCTTCAGTACCTTGTAGATG 2717 >seq1 Length=2207822 Score = 104 bits (114), Expect = 3e-16 Identities = 250/369 (68%), Gaps = 11/369 (3%) Strand=Plus/Minus Query 1726676 AGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCG 1726735 |||||| || || |||| || || | | ||||||| || || || | | ||| Sbjct 2189021 AGAAAGTGGTGAGGGCGGGCAGCAGCTTGAATGGCGTCGCAGGCGATCTTCAGGTTGCCG 2188962 Query 1726736 TCGGTGCCGTTCTTGAAGCCGATGGCCAGCGG-CAGTGCCGACGCCATCTCGCGGTGCAC 1726794 ||||||||||||||||||||||||| |||| || |||| | || ||| ||||| || Sbjct 2188961 TCGGTGCCGTTCTTGAAGCCGATGG-GGGCGGAAAGACCCGAGGACAGCTCCCGGTGGAC 2188903 Query 1726795 CTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA-AG 1726853 ||||| ||||| |||||||| || | ||| ||||| | | |||||| | | || | Sbjct 2188902 TTGGCTTTCGGTGGTGCGCGCACCAATGGCCCCCCAGGAGATCAGGTCGCCGATGTACTG 2188843 Query 1726854 GGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGAT 1726913 || | | | | || |||||| | | ||||| | | |||| | || | Sbjct 2188842 CGGGCTGATGGTGTC-CAGGAACTCGGAGCCTGCGGGCACGCCCA-GGCG--GTTGATTT 2188787 Query 1726914 CGCGCAACAGGCGGC--GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAG 1726971 | || ||| ||| |||| | |||||| ||| | | |||| | | |||| || Sbjct 2188786 CAACCAGCAGTTGGCGGGCGATAC--GCAGGCCCTCGTCGATGCGGTAGCTCTCGTCCAG 2188729 Query 1726972 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 1727031 || ||||||| || |||||||||||| || ||||| ||||| ||||| |||| || | Sbjct 2188728 GTAGGGGTCGTTGATCAGGCCCTTCCAGCCCACGGTGGTGCGTGGCTTCTCGAAGTAAAC 2188669 Query 1727032 GCGCATGAC 1727040 ||||| || Sbjct 2188668 CCGCATCAC 2188660 >seq12004 Length=266125 Score = 95.1 bits (104), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||| | ||||||||||| || || || | | || Sbjct 250964 GCTTGGCCAGCTCTCCAGGAAGCAGCAGTCTGACGGCGGTCTGAATTTCCCGGGAGATGA 251023 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | | |||||| | || |||||||| |||||||| | ||||| || | | Sbjct 251024 TGGTAGTTCTCTTGTTGTACTGAGCCAGACGCAATGCCTCGGTTGCAATGCGTTCAAAAA 251083 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||| ||||||| ||||| | |||| | |||| || ||| |||| Sbjct 251084 TGTCATTGACGAACGAATTCATGATTGACATGGCCTTGCTCGAGACACCAGTGTCAGGGT 251143 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||| || ||| |||||||| Sbjct 251144 GGACTTGC--CAGTACCCTGTAGATG 251167 >seq15668 Length=647317 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||||||||||||| ||||||||||| | || | | || || ||||| |||||||| Sbjct 303438 ACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCGAGGTTTTGCTGGTTAC 303497 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTG 1628276 | | ||||| |||||| |||| ||||||||| |||| ||| ||||||| ||| Sbjct 303498 TCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCCTGTCTCGACCTG 303552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105662035706000