Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9360 136 4e-27 seq9661 123 2e-23 seq15668 107 2e-18 >seq9360 Length=410125 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 230587 ACGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCC 230646 Query 24761 ACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 |||| || | || |||| || | ||| || ||||| || |||||||| |||||||| Sbjct 230647 TCCGATACCATCGAGAACGTGAAGGCCAAA-ATTCAAGATAAGGAAGGAATCCCTCCCGA 230705 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 |||||| ||| | |||||||| || || ||| |||| ||| | | | |||| || || Sbjct 230706 TCAACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTA 230765 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||||||||| | || |||| || ||| Sbjct 230766 CAACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTACGTCTGCGGGGTGGC 230817 >seq9661 Length=48700 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || | || || || ||| | Sbjct 31817 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAGGTGGAGGCCTCG 31758 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||| || ||||| || |||||||| ||| Sbjct 31757 GATACCATCGAGAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCTCCCGACCAA 31698 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||| | |||||| ||| | | || || || ||| Sbjct 31697 CAGCGTCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGCCGAACCCTTTCCGACTACAAC 31638 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||||||| || || || |||||||| |||| |||| || ||| Sbjct 31637 ATCCAAAAGGAGTCTACCCTCCACTTGGTACTGCGTCTGCGTGGTGGC 31590 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || ||||| | || || || ||| Sbjct 32048 ACAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCTTGGAGGTGGAGGCC 31989 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || ||||| ||||| || ||||| || |||||||| Sbjct 31988 TCTGATACCATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGAC 31929 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||| | |||||||| || || ||| ||||||| ||| | | || || || Sbjct 31928 CAACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGAACCCTTTCCGACTAC 31869 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || |||||||| |||| |||| || || Sbjct 31868 AACATCCAAAAGGAGTCAACCCTCCACTTGGTACTGCGTCTGCGTGGTGG 31819 >seq15668 Length=647317 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || |||||| | ||||| ||||| | Sbjct 380167 GATGCAGATCTTTGTGAAAACTCTCACTGGGAAGACAATTACGTTGGAAGTTGAAGCTTC 380226 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | |||| || ||| || || ||||||||||| || || ||||| || || Sbjct 380227 TGACTCAATTGAAAATGTTAAATCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGACCA 380286 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| | || |||||||| || || ||||| || ||| Sbjct 380287 ACAGAGATTAATCTTTGCTGGCAAGCAGCTTGAAGAT 380323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449796373040000