Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq1 241 2e-58 >seq1 Length=2207822 Score = 241 bits (266), Expect = 2e-58 Identities = 296/396 (75%), Gaps = 10/396 (3%) Strand=Plus/Plus Query 35452 GGGTCACACC-CGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAG 35510 ||||||| || ||| |||||||||||||| ||||| || || ||||| | | |||||| Sbjct 1899954 GGGTCACGCCGCGT-TGGCCCTGGTATTTGCCGCCTCGGTCTTTGTAGCTGGTCTCGCAG 1900012 Query 35511 TCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACA-CCTTCGTTCGCGTACACACGCGC 35569 |||||| ||||| |||||||||| ||| | |||| |||||| ||||| | || Sbjct 1900013 ATCTCGTCGCTCTCAAAAAACAGCACCTG-GGCACAGCCTTCGCCTGCGTAAATCTTGGC 1900071 Query 35570 CGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAG 35629 ||||| ||| ||||| ||||||||| ||||||| || |||||||| || || | Sbjct 1900072 GGGCAGTGGGGTGGTGTTAGAGAACTCCAGCGTCACATAGCCCTCCCACTCGGGCTCAAA 1900131 Query 35630 CGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCAC 35689 ||| || |||||||||||||| || |||||||| ||||| ||||| |||| |||||| Sbjct 1900132 CGGGGTGACGTTGACGATGATGCCGCAGCGCGCATAGGTACTCTTGCCCAGGCACACCGT 1900191 Query 35690 GAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGG 35749 || || |||| || ||||| ||||| ||||||||||| ||||| || ||||| || || Sbjct 1900192 CAGCACACTGCGGGGGATGCGAAAGTACTCGACCGTGCGGGCCAGGGCAAAGCTATTGGG 1900251 Query 35750 CGGAATCAGGATGCTGTCA--GCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTT 35806 ||| || ||||| | || ||||| | | | | || ||| || |||||||| Sbjct 1900252 CGGGAT---GATGCAGACATCGCCTTCAATATCAACAAAGCTCTTCTCGTCAAAGTTCTT 1900308 Query 35807 CGGATCAACCACTGCGCTGTTGATGTTGGTGAAGAC 35842 ||| || ||||| | || ||||||||||||||| Sbjct 1900309 CGGGTCCACCACAGTCGAGTGGATGTTGGTGAAGAC 1900344 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 122605 CGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAG 122664 ||||||||||||||||||||||||||| | ||||||| | |||||| |||||||| Sbjct 1918861 CGGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGTTCGAG 1918802 Query 122665 TCCAACACGACCCACCA 122681 ||| |||||||||||| Sbjct 1918801 TCCCGCACGACCCACCA 1918785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825730968720000