Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9059 136 6e-26 seq12004 129 9e-24 seq15558 123 4e-22 seq1 113 7e-19 seq1448 109 9e-18 seq15668 91.5 2e-12 seq4313 86.0 1e-10 >seq9059 Length=664736 Score = 136 bits (150), Expect = 6e-26 Identities = 177/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||| || ||||| ||||||||| |||| || || || | | Sbjct 2961 TGTATTTGGTAACAGCCTTGGTGCCTTCTGATACGGCGTGCTTGGCGAGCTCTCCAGGAA 2902 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||||||||||| || || |||| | ||| || | | |||||| || | Sbjct 2901 GCAGCAGCCTGACGGCGGTCTGAATTTCCCGGGAGGTGATGGTAGTTCTCTTGTT-GTAC 2843 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| || |||||||| | ||||| || | ||||| ||||| ||||| ||| Sbjct 2842 TGAGCCAGACGCGATGCCTCGGTTGCAATGCGTTCAAAAATGTCATTGACGAACGAATTC 2783 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | ||| | |||| || ||| ||||| || ||||| || |||||| Sbjct 2782 ATGATTGACATGGCCTTGCTCGAGACACCAGTGTCAGGGTGGACTTGCTTCAGTACCTTG 2723 Query 1485709 TA 1485710 || Sbjct 2722 TA 2721 >seq12004 Length=266125 Score = 129 bits (142), Expect = 9e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || ||||| ||||||||| ||||||| || || | | Sbjct 250925 TGTACTTGGTAACAGCCTTGGTGCCTTCTGATACGGCGTGCTTGGCCAGCTCTCCAGGAA 250984 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||||||||||| || || |||| | ||| || | | |||||| || | Sbjct 250985 GCAGCAGTCTGACGGCGGTCTGAATTTCCCGGGAGATGATGGTAGTTCTCTTGTT-GTAC 251043 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| || |||||||| | ||||| || | ||||| ||||| ||||| ||| Sbjct 251044 TGAGCCAGACGCAATGCCTCGGTTGCAATGCGTTCAAAAATGTCATTGACGAACGAATTC 251103 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||||| | ||| | |||| || ||| ||||| || ||| Sbjct 251104 ATGATTGACATGGCCTTGCTCGAGACACCAGTGTCAGGGTGGACTTGC 251151 >seq15558 Length=176468 Score = 123 bits (136), Expect = 4e-22 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||| |||||| ||| || || ||| ||||||| || || |||||||| |||||||| Sbjct 143239 AGGTAGACCAAGGCACTCTGTTCGAGCTGATCCTGGCAGCGAACTACCTGGACATCAAAG 143180 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 ||| ||||| | |||||||| || |||||| | |||||||||||||| || |||| Sbjct 143179 GCCTGCTCGACGTCACCTGCAAGACGGTAGCCAACATGATCAAGGGCAAGTCTCCTGAGG 143120 Query 2035732 ACATCCGCAAGACCTTTAACATCAAG 2035757 | || ||||||||||| || |||||| Sbjct 143119 AGATACGCAAGACCTTCAATATCAAG 143094 >seq1 Length=2207822 Score = 113 bits (124), Expect = 7e-19 Identities = 224/326 (69%), Gaps = 7/326 (2%) Strand=Plus/Minus Query 2175071 CACGCTGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTC 2175130 ||||| ||| ||||||||||| || || || || || | | |||| |||| |||| || Sbjct 1473835 CACGCCGCCATCGGTGCCGTTCTTGAAGCCTACGGGGCAAGACAGCCCCGAGGCCAGTTG 1473776 Query 2175131 GCGGTGCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGC 2175190 |||||| ||||||||| |||||||| || || | ||| ||||| | ||| | ||| || Sbjct 1473775 GCGGTGGCTCTGGCTCTCCGTGGTGCGGGCACCAATGGCCCCCCAGGACACCACGTCGGC 1473716 Query 2175191 CAAATAGGGC-GCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGA 2175249 | || || || || ||| || | ||||||| | ||||| |||| | || | Sbjct 1473715 AATGTACTGCGGCGACAGCAGGTCT-AAAAACTCGGTGCCTGCGGGCAGGCCCATCTCCA 1473657 Query 2175250 CGACCAGGTCGCGCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGAC 2175308 | | | || |||||| | || | | |||| ||||| || | |||| | Sbjct 1473656 CAATC---TCCAGCAGCAACTGGCG-GGCGCGGCGCAGGCCCTCGTTGATGCGGAAGCTG 1473601 Query 2175309 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 2175368 ||||| ||| |||||| || | ||||||||| || || || ||||||||||| ||| Sbjct 1473600 CCGTCTAGGCGCGGGTCGTTGATAAAGCCCTTCCAGCCCACAGTAGTGCGCGGCTTCTCG 1473541 Query 2175369 ACATAGGCGCGCATGACCACCAGGAG 2175394 | ||| | ||||| || | ||| || Sbjct 1473540 AAGTAGACCCGCATCACGATCAGCAG 1473515 >seq1448 Length=175156 Score = 109 bits (120), Expect = 9e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 794574 ||||| |||||||| ||| | | |||||| || ||||||||| ||||||| | | Sbjct 99397 GCCCAGTCTGCCTTCTTCTTGATGCAGGGCATGGTCTCGATGGCGTTAAAGAGGCGCGTC 99456 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 | || | | | ||| || |||||||| ||| ||||| ||| |||| ||||||||| Sbjct 99457 TGCTGGGCGGTGTCGGCGATGTAGGTGTTGATCAGGAGGCTGTACATCTCAGAGTGGATG 99516 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || ||||||||||||||||| || |||||| Sbjct 99517 TTCTCCATGGCGATCTGGAAGCCGTAGAAGCAG 99549 >seq15668 Length=647317 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||||||||| ||| ||||||||||| | || | ||||||| ||||| |||||||| | Sbjct 303438 ACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCGAGGTTTTGCTGGTTAC 303497 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTG 2071688 | | ||||| |||||| |||| |||||||| |||| || ||||||| ||| Sbjct 303498 TCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCCTGTCTCGACCTG 303552 >seq4313 Length=100589 Score = 86.0 bits (94), Expect = 1e-10 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 429627 GGTCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACC-TACAACGCCGACTTTGACGG 429685 ||||| || ||||| | |||||| | |||||| |||| |||||||| ||||| ||||| Sbjct 27335 GGTCG-ACATTCCGCATGAACCTGTCTGTGACGT-CACCGTACAACGCAGACTTCGACGG 27278 Query 429686 CGACGAGATGAACCTGCACGTGCCCCAG 429713 ||||||||||||||||||||||| ||| Sbjct 27277 TGACGAGATGAACCTGCACGTGCCGCAG 27250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914331657902000