Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_022330.1 Length=76586 Score E Sequences producing significant alignments: (Bits) Value seq2224 129 3e-25 >seq2224 Length=1872321 Score = 129 bits (142), Expect = 3e-25 Identities = 239/347 (69%), Gaps = 13/347 (4%) Strand=Plus/Minus Query 66512 CACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAAC 66571 || ||||| || ||| ||||| |||||||||| || | ||||||| | ||||| Sbjct 660940 CAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGACGGCCACCATCAAAAAGTCCAAC 660881 Query 66572 ACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCC 66629 || ||| |||||||| | ||| ||||||||| | || | || ||| Sbjct 660880 TGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTTGGTA--GCC 660823 Query 66630 CGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATG 66689 | ||| |||||||| ||||| || || ||| |||||||||||| || ||| |||| Sbjct 660822 C---TGAAACCACCACCGGCGGCAATGCCCTGAAGTTCTACGCCTCGGTGCGCCTGGACA 660766 Query 66690 TCCGTCGCATCG---CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGG 66746 |||||||||| | ||| | | |||| |||| ||| || |||| | ||||| | Sbjct 660765 TCCGTCGCATTGGTTCCATCAAAAAGG---GCGAAGAGATCGTGGGCAGCGAAACCCGCG 660709 Query 66747 TGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGT 66806 | || ||||||||||||||| | ||||| || | | ||||||||| | || ||| Sbjct 660708 TCAAGGTCGTCAAGAACAAGGTAGCCCCCCCCTTCAAGGAGGCCGAGTTCGACATCCTGT 660649 Query 66807 ACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 66853 | || ||||| | || |||| ||| || ||||||||| |||| Sbjct 660648 ATGGCGAGGGTGTGAGCCGCGAGGGCGAGATCATCGACCTGGGCGTG 660602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244896664006000