Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq10870 122 6e-23 seq9360 104 2e-17 seq9661 96.9 2e-15 >seq10870 Length=359794 Score = 122 bits (134), Expect = 6e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| |||||||||||||| |||||||| |||| || ||||| | || | || |||| Sbjct 75540 CATCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACCTTCCT 75481 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | |||||| |||||| | | || | ||| ||||| || |||| ||| | Sbjct 75480 TGTCCTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAGGGTGA 75421 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| |||||||| ||||| |||||||||||||| Sbjct 75420 TGGTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 >seq9360 Length=410125 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 230801 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 230742 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||| || || || || || | || | || ||||| || Sbjct 230741 TCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCT 230682 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | || |||||| || || | || |||||| Sbjct 230681 TGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTC 230622 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| |||||||||||||| Sbjct 230621 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq9661 Length=48700 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| |||||| || ||||| ||||| || ||| | || | || Sbjct 31833 CAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTC 31892 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || ||||| || || || ||||| | || | || ||||| || Sbjct 31893 CTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATC 31952 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | ||| |||||| || || | ||| ||||| Sbjct 31953 TTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGT 32012 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || |||||||| || ||||||||||| Sbjct 32013 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| |||||| || ||||| ||||| || ||| | || |||| Sbjct 31605 CAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATC 31664 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || | ||||| || || ||||| || || || ||||| | || | || ||||| || Sbjct 31665 CTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATC 31724 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | || |||||| || || | ||| || Sbjct 31725 TTGGATCTTCGCCTTCAC--ATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTGATA 31782 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || ||||||||||| Sbjct 31783 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325621351142000