Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq13870 109 1e-19 seq197 80.6 7e-11 >seq13870 Length=3885 Score = 109 bits (120), Expect = 1e-19 Identities = 211/309 (68%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 18770 aaaaaaCTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCC 18829 |||||| ||| || || |||||||| |||||| || || || ||||| ||| ||| Sbjct 2486 AAAAAAGATTCGGCAACGGCGTTGTCCCAACAGTTTCCACGCCGACTCATGCTGGGCTCA 2427 Query 18830 AGCCCGTGTGATTT-CAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATC 18888 ||| ||||| ||| ||| | || ||| |||| || |||| || ||||||||| Sbjct 2426 AGCTGGTGTGTTTTACAGAATCGTAA-CCAGTCATCACTGCTGTATTGCGAGCCTTGATC 2368 Query 18889 AGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATT 18948 || || || || |||| || | || | ||||||| ||||||| | |||| Sbjct 2367 TGAGTGTACGAGTACCTTTTTCTTGGGGCGCCTGCGCCACAAAGCCATCAACAAAGCATC 2308 Query 18949 CAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAA 19008 ||| ||||| || ||| || | |||||||||||||| ||||||||||| | Sbjct 2307 CAGAACAATTTCTCGATTCAAGGACGGTTTCATTGACCAGCCAACCACTTTGCGCGAATA 2248 Query 19009 CAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTC 19068 || || || || || |||| ||| ||||| || | ||| || || || || || || Sbjct 2247 CAAATCCACTACGACTGCCAAATAAAGCCAACCCTGCCAAGTTCGAATATAAGTAATATC 2188 Query 19069 CGTTACCCA 19077 || ||||| Sbjct 2187 AGTGACCCA 2179 >seq197 Length=900 Score = 80.6 bits (88), Expect = 7e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 18977 TGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGC 19036 ||||| ||||| |||| ||| || || ||||| || | || || || |||||||| Sbjct 79 TGCATGGACCACCCAACAACGCGCCGAGAAAACAGATCGATGACGACTGCGAGATACAGG 138 Query 19037 CAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCCGGTGCTTC 19095 |||| ||||| ||||||||||||||||| || || ||||| || ||||| || || Sbjct 139 AAGCCCTCGTGGGTCCGGATGTAGGTGATATCTGTGACCCAGAACTGGTCCGGAGCGTC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127076831520000