Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq2224 138 5e-28 >seq2224 Length=1872321 Score = 138 bits (152), Expect = 5e-28 Identities = 241/347 (69%), Gaps = 13/347 (4%) Strand=Plus/Minus Query 65058 CACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC 65117 || ||||| || ||| ||||| |||||||||| || | ||||||| | ||||| Sbjct 660940 CAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGACGGCCACCATCAAAAAGTCCAAC 660881 Query 65118 ACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCC 65175 || ||| |||||||| | ||| ||||||||| | || | || ||| Sbjct 660880 TGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTTGGTA--GCC 660823 Query 65176 CGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATG 65235 | ||| |||||||| |||||||| || ||| |||||||||||| || ||| |||| Sbjct 660822 C---TGAAACCACCACCGGCGGCAATGCCCTGAAGTTCTACGCCTCGGTGCGCCTGGACA 660766 Query 65236 TCCGTCGCATCG---CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGG 65292 |||||||||| | ||| | | |||| |||| ||| || |||| | ||||| | Sbjct 660765 TCCGTCGCATTGGTTCCATCAAAAAGG---GCGAAGAGATCGTGGGCAGCGAAACCCGCG 660709 Query 65293 TGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGT 65352 | |||||||||||||||||| | ||||| || | | ||||||||| | || ||| Sbjct 660708 TCAAGGTCGTCAAGAACAAGGTAGCCCCCCCCTTCAAGGAGGCCGAGTTCGACATCCTGT 660649 Query 65353 ACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 65399 | || ||||| | || |||| ||| || ||||||||| |||| Sbjct 660648 ATGGCGAGGGTGTGAGCCGCGAGGGCGAGATCATCGACCTGGGCGTG 660602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237295131958000