Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq9661 87.8 1e-12 >seq9661 Length=48700 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||||||| | || |||||| Sbjct 32046 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCTTGGAGGTGGAGGCCTC 31987 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || || |||||| ||||| |||||| | || || || Sbjct 31986 TGATACCATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCA 31927 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || || | ||| ||||| ||| ||||||||| ||| | | |||||||| Sbjct 31926 ACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGAACCCTTTCCGACTACAA 31867 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||||||||| || | ||| |||| || | |||| || || Sbjct 31866 CATCCAAAAGGAGTCAACCCTCCACTTGGTACTGCGTCTGCGTGGTGG 31819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398789296402000