Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq12370 163 9e-35 seq11737 145 2e-29 >seq12370 Length=256225 Score = 163 bits (180), Expect = 9e-35 Identities = 220/303 (73%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 188755 AAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAA 188814 || ||||| ||| | || | ||||| ||||||||||| ||||||| | || | ||| Sbjct 42580 AATAAATCAAATATCCTAATTATTGGCTCTACTGGTTCAAGTAAAACTCTTTTGGTACAA 42521 Query 188815 ACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAA 188874 || || || | || | |||||||| | |||| | || |||||||||| || ||| Sbjct 42520 ACCTTAGCAAAAATTCTTGATGTACCTTTCACTATGGCAGACACAACTTCTTTGACCGAA 42461 Query 188875 GCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGAT 188934 ||||| ||||| || |||||||| ||||| ||||||| | ||| ||| |||| ||| Sbjct 42460 GCTGGCTATGTTGGCGAAGATGTTGAAAA-ATATTGCTGAGATTA---CAAACAGCAGAT 42405 Query 188935 TACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCT 188994 | |||| | ||| ||||||| ||| | ||||| |||||| ||||||||| || Sbjct 42404 TTTAATATAGCTAAAGCCCAACGTGGCATTATTTATATAGATGAAACAGATAAAATCGC- 42346 Query 188995 AGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCT 189054 | |||||| |||| | || || || |||||||||| || |||| ||||| ||||| Sbjct 42345 AAAAAATCCGAAAATCCTTCTATAACAAGAGATGTATCAGGAGAAGATGTACAACAAGCA 42286 Query 189055 TTA 189057 ||| Sbjct 42285 TTA 42283 >seq11737 Length=277544 Score = 145 bits (160), Expect = 2e-29 Identities = 317/460 (69%), Gaps = 26/460 (6%) Strand=Plus/Minus Query 188752 ATCAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCT 188811 ||| | ||||| ||| ||||||| || || || || | || ||||| | ||||| Sbjct 133207 ATCGATAAATCGAATCTTCTTTTGGTGGGAGAAACCGGAACCGGAAAAACCCTCATTGCT 133148 Query 188812 CAAAC-ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAAC--TTCTTTA 188868 | | || | | || ||| | |||||||| | || || ||||| || | ||| Sbjct 133147 AGATCTATCGCCCGA-ATGCTCGATGTACCTTTTGCCATTGTGGATGCCACGGTACTT-- 133091 Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTT------CGTTTAATC 188922 || ||||| |||||||| || ||||||||||||| || || ||| | |||| Sbjct 133090 ACCGAAGCGGGTTATGTGGGGGAAGATGTGGAAA--GT-TTACTTACCAAACTTTTA--- 133037 Query 188923 CAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTA 188982 ||||| || ||||| ||| | ||| ||| | || ||||| | ||||||||| || Sbjct 133036 CAAGCCGCCGATTATGATGTACCTAGAGCCGAAAGAGGGATTGTTTTTATCGATGAGATA 132977 Query 188983 GATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGA 189042 |||||| ||||||||||| || | |||| || ||||| ||||| ||||| |||||| Sbjct 132976 GATAAAGTTGCTAGAAAAAGTGACAATCCATCTATCACCCGCGATGTTTCTGGAGAAGGA 132917 Query 189043 GTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGT 189102 || ||||| ||||| | ||| | | ||||| || || | || ||||| || ||||| Sbjct 132916 GTGCAGCAGGCTTTGCTTAAATTGTTGGAAGGAACCGTAGTCAATGTTCCGCCCCAAGGA 132857 Query 189103 GGTCGTAAACACCCTCACCAAGAAATGC-TTGAAATAGATACAACTAATA---TCTTGTT 189158 || | ||||| || | | |||||| | |||| | || ||| | || | |||| || Sbjct 132856 GGAAGAAAACATCCCGATC-AGAAATTCATTGAGGT-GA-ACACCCAAGACATTCTT-TT 132801 Query 189159 TATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTATC 189198 | || |||||||| ||| ||| | ||||| || ||| Sbjct 132800 TGTTGCAGGTGGAGCATTTTCGGGTATAGAAAAAATCATC 132761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591543265664000