Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq2224 89.7 2e-13 >seq2224 Length=1872321 Score = 89.7 bits (98), Expect = 2e-13 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 52764 GTGTGGGTGACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGCGTGGCCTGATCCCG 52823 |||| |||||||||||||| || | ||||| ||| ||||||| ||| | |||||| Sbjct 869334 GTGTTCGTGACCCGCAAGGGCGCGGTGAGCGCTAAGAAGGGCGAGCTGGGCATCATCCCG 869275 Query 52824 GGAAGCATGGGCAC-CGCATCCTATGTCGTCACCGGCAAGGGCAACCC-GCAGGGTCTGC 52881 || ||||||||| | |||| ||| |||| |||| ||||||||| | | | | || Sbjct 869274 GGCAGCATGGGCGCGCGCA-GCTACATCGTGCGCGGCCTGGGCAACCCGGAAAGCTTTGA 869216 Query 52882 AGTCTGCGCCTCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTCGCAAGCTGTTCA 52941 |||| | |||||||| ||||| | | ||| ||||| || ||| |||||| Sbjct 869215 GAGCTGCAGC-CACGGCGCGGGCCGCGTGATGAGCCGCACCAAGGCCAAGAAGATGTTCA 869157 Query 52942 CCGTCGACGACC 52953 |||| ||||||| Sbjct 869156 CCGTGGACGACC 869145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201402207696000