Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq2224 104 9e-18 >seq2224 Length=1872321 Score = 104 bits (114), Expect = 9e-18 Identities = 457/707 (65%), Gaps = 36/707 (5%) Strand=Plus/Minus Query 49774 GGTAACCATTTCATCGAACTATGCCTGGACGA--AACCGGCCGGGTGTGGCTGTTCCTGC 49831 |||||||| ||||||||| | ||||||||||| || ||| ||||||| | | |||| Sbjct 869706 GGTAACCACTTCATCGAAGTCTGCCTGGACGAGCAAGGGGC--GGTGTGGTTCATGCTGC 869649 Query 49832 ACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCGCAGA 49891 ||||||| |||||||| || ||||| |||| | | |||| || | || ||| Sbjct 869648 ACTCCGGTTCGCGTGGGGTGGGCAATGCCATCGGCACCCATTTCATCGAGCTGGCCAAGA 869589 Query 49892 AACTCATGGACCGCTGGTGGATTCAGCTCC-CAAGCCCC-----GACCTGGCGTACTTGC 49945 | |||| | | | | || | | | |||| ||| |||| ||||| Sbjct 869588 A------GGACGCCGAGCGCAACCAACGCAACCTGCCCGATGAAGACTTGGCCTACTTCG 869535 Query 49946 CGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTCG 50005 | || | | | | || | ||||||| |||| | | || ||||||||| ||| | Sbjct 869534 AAGAGGGGGCGCAGTACTTTGGCGACTATGTGCGCGCGGTGGGTTGGGCGCAGAAGTTTG 869475 Query 50006 CGCTAGAG-AACCGCGCCGAAATGATGG---ACCGTTTCGCTATCGTGTTCGGCGAGTGG 50061 ||| || | ||||||| | ||||||| ||| | || | |||| ||| || Sbjct 869474 CGC-AGCGTAACCGCGAAGTGATGATGGCCAACCTCATTGCCACCGTG-----CGACAGG 869421 Query 50062 ATCGGGCACCCCACCGGCGGGG-CGCTGGTGGAAACCACGGTGAACACGCACCACAACTA 50120 || |||| |||| | | ||| | || | ||||||| ||||||||||| Sbjct 869420 -TCAT-CACCAAACCGTTTGAGTCGCACATCGAGGC---GGTGAACTGCCACCACAACTA 869366 Query 50121 CACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGACCCGCAAGGGCGCCATCGA 50180 | ||| || || ||| || ||||||| |||||||||||||||| | Sbjct 869365 TGTGCAGCAAGAGCGCCACTTTGGTGAAGACGTGTTCGTGACCCGCAAGGGCGCGGTGAG 869306 Query 50181 CGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATGGGCACCCCGTCATACGTGGT 50240 ||| | |||| | ||||| | |||||||||||||||||| | | ||| | || Sbjct 869305 CGCTAAGAAGGGCGAGCTGGGCATCATCCCGGGCAGCATGGGCGCGCGCAGCTACATCGT 869246 Query 50241 GCGCGGCAAGGGCAACCCGGCCGGGCTGTGCTCGGCGCCG-CACGGCGCCGGCCGCCGGC 50299 ||||||| ||||||||||| ||| || | || | |||||||| |||||| | Sbjct 869245 GCGCGGCCTGGGCAACCCGG-AAAGCTTTGAGAGCTGCAGCCACGGCGCGGGCCGCGTGA 869187 Query 50300 ATTCCCGCACCCAAGCCCGGAAGCTGTTCACCGAGGCCGACCTCGCCGACCGGATGCAGG 50359 ||||||| | ||| |||| ||||||||| || ||||| | | | | | | Sbjct 869186 TGAGCCGCACCAAGGCCAAGAAGATGTTCACCGTGGACGACCACATCCAAGCCACGGCCG 869127 Query 50360 GTATCGAGTACCGGCACGGGGACGCGTGGGTTGACGAAATCCCGGACGCCTACAAGCCAA 50419 || | || | ||| | | || || | | ||||||||||| |||||||| | Sbjct 869126 GTGTGGAATGCCGCAAAGACGAAGCCGTGATCGACGAAATCCCCATGGCCTACAAAGACA 869067 Query 50420 TTCAGACCGTGATGGCCGACGCCGC-CGACCTCGTGGAGGTTGTGCA 50465 | | | ||||||| || ||| || ||| | |||||||| ||||| Sbjct 869066 TCGACGCGGTGATGG-CGGCGCAGCAGGACTTGGTGGAGGTGGTGCA 869021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193718583800000