Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_024144.1 Length=54279 Score E Sequences producing significant alignments: (Bits) Value seq14678 114 4e-21 >seq14678 Length=2562 Score = 114 bits (126), Expect = 4e-21 Identities = 184/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 32755 TTCTT--ATTTCATCAAGCGTAACTTTGAAGAATTCTTTTCTATTATTTACCTTGTTAAC 32812 ||||| |||||||| | | || || ||||| ||| |||||| |||| || || | Sbjct 1963 TTCTTCAATTTCATCTAATCTGACGTTAAAGAACTCTCTTCTATGATTTGTTTTATTTAG 2022 Query 32813 TCTCTTATTATCAAAAGCTTTATGTAAAGCTGATTCTAATTTAGGTGCATCTTCAC--TA 32870 | ||||| | |||||||| || | | | |||||| ||| ||||||| |||| || Sbjct 2023 ACGTTTATTTTTAAAAGCTTGGTGGATATCATATTCTAGTTTCGGTGCATTTTCAGAATA 2082 Query 32871 AATATAGTCGCATGTATATCATATTTAAAAGGAACTGATGCACTACTTAATTCATTTATT 32930 |||| ||| ||||||| |||| | ||| ||||| |||||| | ||||| | | | Sbjct 2083 AATA-AGT-GCATGTACATCAAAGCGAAATGGAACCGATGCATCGCCCAATTCTCTAACT 2140 Query 32931 CTCTCAGTTGGGTCTAATCTTCTAGTTACTCCTATTTTATATATATTTTCTCCAAAACTA 32990 || || ||| || | |||| || | ||| |||||||| | ||||||||||| | Sbjct 2141 CTATCTAGTGGTTCAAGCCTTCGTGTCATTCCGATTTTATAGACGTTTTCTCCAAAGGAA 2200 Query 32991 CCAATATTGGAGATTATGTA 33010 |||| ||| ||||||| ||| Sbjct 2201 CCAAGATTTGAGATTACGTA 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173534099156000