Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9360 159 7e-34 seq9661 154 3e-32 seq10870 129 1e-24 seq15668 123 5e-23 >seq9360 Length=410125 Score = 159 bits (176), Expect = 7e-34 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 |||||||| || || | || ||| || || ||||| || ||||| || ||||| || | Sbjct 230827 TTTATCACTGGCCACCCCGCAGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGT 230768 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 | || || || || | | ||| ||||| | || || ||||||||||| || | |||| Sbjct 230767 TGTAGTCGGACAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTT 230708 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 |||| ||||| |||||||||||||||||||| || || || || || || || ||||| Sbjct 230707 GATCGGGAGGGATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGG 230648 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || |||| ||| || |||||||| |||| ||||| ||||| |||||||| Sbjct 230647 AGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq9661 Length=48700 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || ||||| || || || || || || || || || || | Sbjct 31817 TACCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG 31876 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| |||||| || | || || ||||||||||| || | ||||| || |||| Sbjct 31877 AAAGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAG 31936 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||||||||| || || || || || || |||||| | || | Sbjct 31937 GGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCA 31996 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || |||||||| |||| ||||| || || ||||||||| Sbjct 31997 CCTCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 32046 Score = 145 bits (160), Expect = 1e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 ||||| || || | || |||||| || ||||| || ||||| || || || || || | Sbjct 31583 ATCACTGGCCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGT 31642 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || || || ||| || || |||| || || ||||||||||| || | ||||| | Sbjct 31643 AGTCGGAAAGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGT 31702 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | ||||| || |||||||||||||| ||||| || || ||||| || || ||||| | Sbjct 31703 CGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGG 31762 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| || || |||||||| |||| ||||| || || |||||||| Sbjct 31763 CCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq10870 Length=359794 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 || || ||||| ||||| |||||||| ||||| ||||| ||||| || || || || ||| Sbjct 75544 CTGCCATCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACCT 75485 Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| || ||||| |||||||| ||||||||||| || ||| || || || || | Sbjct 75484 TCCTTGTCCTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAGG 75425 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| || || | ||||| ||||| |||||||| Sbjct 75424 GTGATGGTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 >seq15668 Length=647317 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || || ||||||||||||| ||| ||||| || ||||| || || || Sbjct 380325 CCATCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCT 380266 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || |||||||| || | ||| ||||||||||| | ||| || ||| |||||||| || Sbjct 380265 TTGTCTTGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTA 380206 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || | || || ||||| |||||||| Sbjct 380205 ATTGTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCAT 380168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981600766102000