Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1448 131 2e-25 seq9661 109 5e-19 seq9360 109 5e-19 seq10358 107 2e-18 seq10870 86.0 6e-12 >seq1448 Length=175156 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||||||||||||||| || || || |||||||||||||| ||| Sbjct 97740 AGGCAGGCAAAGTCAGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGCTAAAAGTC 97799 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || || ||||||| |||| | |||| | |||| || | |||||| ||||| ||| Sbjct 97800 AGACCCGGCATGAGGCCTCGCTTCTTCAGCCAGAAAATTGAGGCAAAAGAACCCGAGAAG 97859 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816 || | ||||||||| |||||| || || || | ||| || | | |||| |||| Sbjct 97860 AAAATCCCCTCCACGGCGGCAAACGCCACTATTCTCTCCGCGTAACTGGCCGACTTG 97916 >seq9661 Length=48700 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || ||||| ||| | || | | | ||||| | Sbjct 31612 AAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCA-TCCTCTAA 31670 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || ||||| ||||||||||||||||||||||| || ||| Sbjct 31671 CTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGGAT 31730 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | || || | || |||||| || | ||||| || ||||| Sbjct 31731 CTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTGATAGTCTTGCC 31790 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 31791 AGTCAGGGTCTTCACGAAGATCTGCAT 31817 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || ||||| ||| | || ||| |||||| | Sbjct 31840 AAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACC-GTCCTCCAA 31898 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| ||||| ||||||||||||||||||||||| || || Sbjct 31899 CTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAAT 31958 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | || || | || |||||| || | ||| | ||| ||||| Sbjct 31959 CTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTCTTGCC 32018 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 32019 AGTCAGGGTCTTCACGAAGATCTGCAT 32045 >seq9360 Length=410125 Score = 109 bits (120), Expect = 5e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| ||| | || || | Sbjct 230795 AAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAA 230737 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || ||||| || ||||||||||| |||||||| || ||| Sbjct 230736 CTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATC-TTGAA 230678 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | ||| | || |||| || |||||| || | |||| ||| |||| Sbjct 230677 TTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCTTGC 230618 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || || || |||||||| Sbjct 230617 CAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq10358 Length=34033 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| |||||||||||||| || || || || ||||||||||| || ||| Sbjct 105 AGGCAGGCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGTTGCTGAAAGTC 164 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || || ||||||| ||| | |||| | |||| || | ||||| ||||| ||| Sbjct 165 AGACCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAGATCCCGAGAAG 224 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816 || | |||||||| |||||| || || || | ||| || | | |||| |||| Sbjct 225 AAAATCCCCTCCACTGCGGCAAACGCCACTATTCTCTCCGCGTAACTGGCCGACTTG 281 >seq10870 Length=359794 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || ||| | || || | ||| ||||| || || || ||||||||| Sbjct 75538 TCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACCTTCCTTG 75479 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| |||||| |||| | |||| ||||| | | |||||| || | ||||| Sbjct 75478 TC-CTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAGGGTGAT 75420 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||| || || || |||||||| Sbjct 75419 GGTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483312030320000