Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq2224 365 1e-96 >seq2224 Length=1872321 Score = 365 bits (404), Expect = 1e-96 Identities = 563/794 (71%), Gaps = 12/794 (2%) Strand=Plus/Plus Query 17740 AGTCGTCCGCGCATCATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTG 17799 ||| | | ||||| |||||| || ||| || || |||| ||| || | ||| |||| Sbjct 774625 AGTTGGCGGCGCACCATCCACAGGTTGGATAGCGCGAACAGCGTGTGCAGTTGCGCCGTG 774684 Query 17800 TTCTTCACCAAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGG 17859 |||||| ||| || |||||||||||||||| ||||| ||| | |||||||| || ||| Sbjct 774685 TTCTTCCCCAGCCCGCGATAGCGCACCTTCATGTGCCCAAACCGCCGCTTGATCACGCGG 774744 Query 17860 AACGGATGTTCTACGCGAGCACGAATGCGCGCCTTGACCCGCTCCAACTCATCGA-CGAG 17918 ||||| || || || || | |||| ||||||| ||||| ||| |||| | || Sbjct 774745 AACGGGTGCTCCACCTTGGCTCTGATGCTGGCCTTGAGTATCTCCACCTCGTCGATCAAG 774804 Query 17919 CGCACCCGACACGGTGTTCTTGTCCAAGGCGCGGCGTTTGCTCGGTCGCAATGCCACATG 17978 || || | | | ||||||||| || ||||| |||| ||| |||| || | | Sbjct 774805 CG-ACTCACTTCTTGGCTCTTGTCCAGCGCCCGGCGCTTGCCCGGCCGCATCGCGATGTT 774863 Query 17979 CCAACGCACCTTCAACTTCTGCACCTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATC 18038 ||| ||| |||| ||| || ||||||| | | ||||||||||| ||||| Sbjct 774864 CCAGTCGACCCCTGACTTG-GCA--TCAGGGCGCTTGGCCACACCCTGGTAGCCCGCATC 774920 Query 18039 GCCGAATACGTCGGCCTCCTTACCGTGCACCAACGCATGCGCTTGCGTCACGTCGTTGAC 18098 ||| ||| | | | ||||| ||||||| || || | || | ||||| || | ||| Sbjct 774921 GCCAAATGCCACTGTCTCCTCGCCGTGCAGCAGTGCGTTGGCCTCGGTCACATCATGGAC 774980 Query 18099 GTTGGCGGCCGTGCCCAGCACGGTATGCACCAGCCCCGAGTCCGCATCCACGCCAATGTG 18158 | || | || ||||| | ||||| |||||||| |||||||| ||||||||||||||||| Sbjct 774981 GCTGCCAGCGGTGCCTCGAACGGTGTGCACCAGTCCCGAGTCAGCATCCACGCCAATGTG 775040 Query 18159 CGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCG 18218 ||| ||||| ||||| | |||||| || |||||| || | | |||||| || | ||| Sbjct 775041 CGCCTTCATGCCGAAGTACCACTGACCGCCCTTCTTGCTCGGCTTCATCTCCGGATTGCG 775100 Query 18219 CTTGCCGCTGCCATTCTTGGTCGAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGT 18278 | ||| | | |||||||||||||| |||||||||||||| | |||||| |||||||| Sbjct 775101 TTCGCCCTGGGCGTTCTTGGTCGAGCTTGGCGCGGCAATCAGTGTGGCGTCCACCACCGT 775160 Query 18279 GCCCTCTTTGAGCAGGTAGCCCTTCGC-ACTGAGTTGCGCGTTGACCGTCTGCAGAAATT 18337 ||| | |||| || |||| || | || | |||||| |||||| || | | Sbjct 775161 GCCTGCGCGAAGCA-TCAGGCCTTTGCTGCGCAGCAGATCGTTGATCGTCTGAAGGATCT 775219 Query 18338 GCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCG 18397 | |||| | ||| |||||||| | ||||||| ||||| ||| || | ||||| Sbjct 775220 GGGGTGCCATCTTGTGCTTCTCCAGCACGCGCCGAAACCGCAGGATGGTGGTCTTGTCCG 775279 Query 18398 GCAGTCGGCTTATGCC----TCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGTAC 18453 | | ||||| || || ||| || || ||||| | ||| ||| | || ||| | Sbjct 775280 GGA-CCGGCTCATTCCAGATTCCAAGACCAGCGAAGTCCCGGAACAGCACCATGTCACGC 775338 Query 18454 AGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGC 18513 |||||||||||||| ||| ||| |||| |||||| ||||||| || || || ||| Sbjct 775339 AGCGCCTCTTCCATGGCCGGGTCGCTCAGGTTGAACCACTGCTGCATGAAATGAATTCGC 775398 Query 18514 AGCATCGTTTCGAC 18527 |||||| ||| || Sbjct 775399 AGCATCACTTCCAC 775412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127857464624000