Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10870 102 2e-16 seq9360 102 2e-16 >seq10870 Length=359794 Score = 102 bits (112), Expect = 2e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| ||||||| Sbjct 75387 CAGATCTTTGTGAAGACTCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCTGAC 75446 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||||||| ||||| || || ||||| ||| || ||| || Sbjct 75447 ACAATTGAAAATGTCAAAGCAAAA-ATTCAGGACAAGGAAGGTATTCCCCCTGACCAACA 75505 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGG 206331 |||||||||||||| |||||||| |||||||||| ||| Sbjct 75506 GAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGCAGG 75545 >seq9360 Length=410125 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || |||||| |||| ||||| || || Sbjct 230593 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCCGAT 230652 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||||| || |||||||| || || || Sbjct 230653 ACCATCGAGAACGTGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCCGATCAACAG 230712 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || ||||||||||||||||| | || || |||| |||||| || Sbjct 230713 CGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAACATC 230772 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| |||||||| || ||| Sbjct 230773 CAGAAGGAGTCTACCCTCCAC 230793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181548242578000