Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9661 113 4e-20 seq9360 111 1e-19 seq15668 89.7 5e-13 >seq9661 Length=48700 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||||| ||||| |||||||||||| | ||| Sbjct 31824 ACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 31883 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || | ||| ||||| | | |||| ||||||||||| || ||||| ||||| Sbjct 31884 TCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCC 31943 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| || |||| | || | ||||| | | |||||| || | Sbjct 31944 TTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAA 32003 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 32004 GGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | | ||||| ||||| |||||||||||| | ||| Sbjct 31596 ACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 31655 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| || || | | |||| ||||||||||| || ||||| ||||| Sbjct 31656 TCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCC 31715 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| || || |||| | || | ||||| | | |||||| || | Sbjct 31716 TTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAA 31775 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | ||| |||||||| Sbjct 31776 GGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq9360 Length=410125 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || ||| || |||||| Sbjct 230798 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 230739 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | | |||| |||||||||||||| ||||| || ||||| ||||| | Sbjct 230738 AACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCTTGA 230679 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| |||| | || | ||||||| | |||||| || | || | || || Sbjct 230678 ATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCTTG 230619 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | || |||||||| Sbjct 230618 CCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq15668 Length=647317 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 147504 GTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATT 147563 |||||| ||||| || | ||||||||| ||| || ||| || | |||||||| || Sbjct 303436 GTACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCGAGGTTTTGCTGGTT 303495 Query 147564 GCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 147620 || || || ||||| ||||||||| ||||||||||||| ||| |||||||| || Sbjct 303496 ACTCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCCTGTCTCGACCTG 303552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476503962480000