Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9059 113 6e-19 seq12004 109 8e-18 seq1 107 3e-17 seq1448 105 1e-16 seq15668 100 4e-15 >seq9059 Length=664736 Score = 113 bits (124), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || ||||| || ||||| || | || ||| | |||| || Sbjct 2718 ATCTACAAGGTACTGAAGCAAGTCCACCCTGACACTGGTGT------CTCGAGCAAGGCC 2771 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| ||||| ||||| ||||| | || ||||| | |||||||| Sbjct 2772 ATGTCAATCATGAATTCGTTCGTCAATGACATTTTTGAACGCATTGCAACCGAGGCATCG 2831 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | | ||||||| | | || ||| | | || || || ||||||||||| Sbjct 2832 CGTCTGGCTCAGTACAACAAGAGAACTACCATCACCTCCCGGGAAATTCAGACCGCCGTC 2891 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | || || || |||| ||||||||| || || ||||||| Sbjct 2892 AGGCTGCTGCTTCCTGGAGAGCTCGCCAAGCACGCCGTATCAGAAGGCACCA 2943 >seq12004 Length=266125 Score = 109 bits (120), Expect = 8e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| | |||| ||||||| |||||||| ||||| ||||| ||||| | || ||||| | Sbjct 251127 CTCGAGCAAGGCCATGTCAATCATGAATTCGTTCGTCAATGACATTTTTGAACGCATTGC 251068 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 |||||||| || ||||| | | ||||||| | | || ||| | | || || || Sbjct 251067 AACCGAGGCATTGCGTCTGGCTCAGTACAACAAGAGAACTACCATCATCTCCCGGGAAAT 251008 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||||| | ||| | | | || || ||||||| ||||||||| || || || Sbjct 251007 TCAGACCGCCGTCAGACTGCTGCTTCCTGGAGAGCTGGCCAAGCACGCCGTATCAGAAGG 250948 Query 725138 CACCA 725142 ||||| Sbjct 250947 CACCA 250943 >seq1 Length=2207822 Score = 107 bits (118), Expect = 3e-17 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 165753 GACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAG 165812 |||||| || | ||||| ||| | ||||||||||||||||| ||||| || ||||| ||| Sbjct 2188855 GACCTGATCTCCTGGGGGGCCATTGGTGCGCGCACCACCGAAAGCCAAGTCCACCGGGAG 2188914 Query 165813 ATGGCGTCGGCGC-TGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGC 165871 || | |||| | | |||| ||||| |||||||| ||| |||||||||||| | || Sbjct 2188915 CTGTCCTCGGGTCTTTCCGC-CCCCATCGGCTTCAAGAACGGCACCGACGGCAACCTGAA 2188973 Query 165872 GACGGCCCTCGATGCCGTGCGCACTGCCGCCCAGCCACACACCTTTCT 165919 || ||| ||| ||| | | |||| |||| || ||| |||||| Sbjct 2188974 GATCGCCTGCGACGCCATTCAAGCTGCTGCCCGCCCTCACCACTTTCT 2189021 >seq1448 Length=175156 Score = 105 bits (116), Expect = 1e-16 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 |||| || || || | || ||||| |||||||||||||| || |||||||||||||| | Sbjct 99562 TGCCTGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACATCCACTCTGAGA 99503 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| ||||||||| |||||||| || ||| | | | || || | ||||||| Sbjct 99502 TGTACAGCCTCCTGATCAACACCTACATCGCCGACACCGCCCAGCAGACGCGCCTCTTTA 99443 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGC 1456139 ||||||||| || |||| | | | ||| ||||| |||||||| Sbjct 99442 ACGCCATCGAGACCATGCCCTGCATCAAGAAGAAGGCAGACTGGGC 99397 >seq15668 Length=647317 Score = 100 bits (110), Expect = 4e-15 Identities = 91/112 (81%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 262122 TCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGC 262181 ||||||| |||||||| |||||| ||||||| |||||| ||||| | || ||||||| Sbjct 303548 TCGAGACAGGCACGCCGTACATGCTCTACAAAGACGCCTGCAACCGCAAGAGTAACCAGC 303489 Query 262182 AGAACCTGGGCACCACGACAGAGGCCAA-CCTGTGCACCGAGATCGTCCAGT 262232 | ||||| ||||||| | || | ||| ||||||||| ||||||||||||| Sbjct 303488 AAAACCTCGGCACCATCA-AGTGCTCAAACCTGTGCACGGAGATCGTCCAGT 303438 Score = 96.9 bits (106), Expect = 5e-14 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 || || |||||| ||||| || || |||||||| ||||||||||| | |||||| Sbjct 305364 TGTTTCCTGTTGACCATGAGGGATGACAGCATCGAGGGTATCTATGACACATTGAAGCAG 305305 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 ||||| || ||||| ||| | || |||||||| || || || ||| | || ||| Sbjct 305304 TGCGCTCTGATCTCTAAGTCTGCTGGCGGCATTGGCGTTAACGTCCACTGTATCCGAGCC 305245 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGC--CAGTCCAACGGCCTTGTGCCCATGCTTC 260147 |||| ||||| | || || || |||||| ||| ||| || | || || |||||| Sbjct 305244 AAGGGCTCCTACATTGCTGGAACAAACGGCGTCAG--CAATGGATTAGTTCCAATGCTTA 305187 Query 260148 GCGTTTTTAAC 260158 | ||||||||| Sbjct 305186 GAGTTTTTAAC 305176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176075066916000