Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9360 109 6e-19 seq9661 107 2e-18 seq15668 84.2 2e-11 >seq9360 Length=410125 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | |||| || Sbjct 230807 AGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 230748 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| ||||| || | |||||| |||||||| || || ||||| Sbjct 230747 CCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCC 230688 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| || || || | || ||||| | ||||| || ||||| Sbjct 230687 TTATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTG 230628 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 230627 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq9661 Length=48700 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| || || || |||||||| |||||||||||| || ||| || Sbjct 31828 AGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGA 31887 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| || || ||||| || | |||||| || ||||| || |||||||| Sbjct 31888 CCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCC 31947 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | || || || | ||||| || | ||| Sbjct 31948 TTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTA 32007 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || || | || || ||||| || |||||| Sbjct 32008 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 32046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || | ||| || || || |||||||| |||||||||||| || ||| | Sbjct 31600 AGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGG 31659 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| ||||| || | |||||| || ||||| || |||||||| Sbjct 31660 CCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCC 31719 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || || || || | || || || | ||||| || | || Sbjct 31720 TTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTG 31779 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 31780 ATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq15668 Length=647317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| ||||| || || | ||| || || || || ||||| ||||| Sbjct 380322 TCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCTTTG 380263 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||||||||| ||| || || | || ||| || | ||| || || | ||||| Sbjct 380262 TCTTGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTAATT 380203 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || | |||||| || || || ||||| ||| Sbjct 380202 GTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCATCTTG 380164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505284685360000