Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq9457 197 2e-45 seq1 179 5e-40 >seq9457 Length=55282 Score = 197 bits (218), Expect = 2e-45 Identities = 496/754 (66%), Gaps = 21/754 (3%) Strand=Plus/Plus Query 160961 AAAGCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTG 161020 ||||| ||||| | ||| |||| || ||||||||| ||||| | || ||| |||| || Sbjct 33092 AAAGCATTAATTACAGGTGTAACCGGTCAGGATGGAGCCTATTTGGCAGAATTTCTTCTT 33151 Query 161021 AAGAAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGA 161080 | || || ||||| || |||||||| | | || | || | ||| ||||| | || Sbjct 33152 CAAAAAGGTTATGAGGTTCATGGTATAAAAAGAAGGGCTTCATTGTTCAATACCGACCGA 33211 Query 161081 ATCGATCAT----------ATCTTC--GA---TCAGTTACACCTC------CACTACGGG 161119 || ||||| |||||| || | | || | || || || || Sbjct 33212 ATTGATCACCTTTACAAAGATCTTCACGAAACTAATGTAAAATTCAAATTACATTATGGT 33271 Query 161120 GATTTGACTGACTCCCTGAACATAGTCTCTATCATTAAGGAAGTAGAACCTGATGAGATC 161179 || |||| |||||| || || | ||| ||| |||||||| |||| || ||||| Sbjct 33272 GACTTGAGCGACTCCACCAATATCATTCGTATTATTCAGGAAGTAAAACCCGACGAGATT 33331 Query 161180 TACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGCA 161239 || ||||| ||||| | || || |||||| ||| || |||||||||||||| || Sbjct 33332 TATAACCTTGGGGCTATGTCGCACGTAAAAGTAAGTTTTGACGAACCTGAATATACCGCT 33391 Query 161240 CAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGACA 161299 | || | | || || |||| | ||||| || || | || | || ||||| Sbjct 33392 AATGTGGACGGAATCGGTACATTAAGGATTTTGGAAGCTGTGAGGCTGTTGGGAATGACC 33451 Query 161300 GATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACA 161359 || | || || || || || || ||| |||| | || || || ||||||||| Sbjct 33452 GAAACATGTCGCATTTATCAAGCCTCTACCTCTGAGCTATACGGCTTAGTACAAGAGGTG 33511 Query 161360 CCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTAT 161419 || ||| ||||| || || || || ||| | ||||| |||| ||||| ||| | ||| Sbjct 33512 CCGCAGTCTGAAACCACTCCATTTTATCCAAGGTCTCCTTATGCAGTAGCCAAATTATAT 33571 Query 161420 GGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATT 161479 || || |||||| | ||||| | || ||| ||| | || | | ||| || Sbjct 33572 GGCTACTGGATTACAGTAAACTATCGCGAAGCTTACAACATGTATGCTTGCAATGGCATC 33631 Query 161480 CTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGG 161539 ||||||||||| || || || | || || || ||||| || ||||| || |||||| Sbjct 33632 CTATTCAACCACGAATCGCCTTTGAGAGGCGAAACCTTCGTGACACGTAAAATCACTAGG 33691 Query 161540 GGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCA 161599 | | | || | || ||| | | || ||||| | || || ||||| | | Sbjct 33692 GCAGTTTCACAAATAGCCTTAGGTCAGGAAGAATGTCTGTTTCTTGGAAATCTCGATGCC 33751 Query 161600 AGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAG 161659 | | |||| ||||||||||| ||||||| | ||||| ||||||||||| || ||||| Sbjct 33752 AAAAGAGACTGGGGTCATGCCAAAGACTACATTGAGGCCATGTGGTTGATCTTGCAACAA 33811 Query 161660 GAAACTCCTGATGACTATGTGATTGCCACAGGTA 161693 || | || || ||||| ||||| || |||| Sbjct 33812 GACGTGGCGGAAGATTATGTTATTGCTACTGGTA 33845 >seq1 Length=2207822 Score = 179 bits (198), Expect = 5e-40 Identities = 496/758 (65%), Gaps = 37/758 (5%) Strand=Plus/Plus Query 160963 AGCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAA 161022 ||| |||||| | || |||| || |||||||| | ||| | || ||| || | | Sbjct 1991151 AGCATTAATCACCGGAGTAACCGGTCAGGATGGCGCATATTTGGCCGAATTTTTGATTCG 1991210 Query 161023 GAAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTC---GTTTAATACAGGAAG 161079 |||||| ||| || ||||||||| || |||| || || ||| || |||| || Sbjct 1991211 GAAGGGATATACCGTTCATGGTATT---CGCAGAAGATCTTCACTGTTCAACACAGCCAG 1991267 Query 161080 AATCGATCATATCTTCG---------------AT-CAG-----TTACACCTCCACTACGG 161118 ||||||||| ||| || || ||| || ||| |||||||| Sbjct 1991268 AATCGATCACCTCTACGCCGATCCGCACGAACATGCAGGCAACTTGATCCTGCACTACGG 1991327 Query 161119 GGATTTGACTGACTCCCTGAACATAGTCTCTATCATTAAGGAAGTAGAACCTGATGAGAT 161178 || |||| |||||| | | || | | | | ||| | | || || || | Sbjct 1991328 CGACATGACCGACTCCAGCAGCCTAATGCGCGTTGTGGAACAAGCAAAGCCAGACGAAGT 1991387 Query 161179 CTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAGC 161238 ||||||| ||| ||| || |||||||| ||||| ||||| ||||| || || || || Sbjct 1991388 CTACAACTTAGCGGCGCAAAGTCATGTAGCCGTATCGTTCGAAGAACCCGAGTACACGGC 1991447 Query 161239 ACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGAC 161298 | ||||||| ||||| ||| | | | || || | || || |||||| | Sbjct 1991448 CAATTCTGATGCCGTGGGAGTCCTTCGCCTCCTTGAAGCTCTGCGCATCACTGGTATGGC 1991507 Query 161299 AG---ATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGA 161355 | | || | | ||||||| || || || || |||| || | || ||||| Sbjct 1991508 TGCGCACAG---CAGGTTCTACCAAGCTTCGACATCAGAACTGTACGGACTTGTTCAAGA 1991564 Query 161356 GACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACT 161415 ||| || ||| |||||| |||||||||||||| || |||||||||| || || || || Sbjct 1991565 GACTCCGCAGCGAGAAACTACACCTTTCTACCCCCGTTCTCCATATGCTGTTGCGAAGCT 1991624 Query 161416 CTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGG 161475 ||||| || |||||| |||||||||||| ||||| ||| ||||| | | ||| Sbjct 1991625 GTATGGCTACTGGATTACTGTGAACTACAGAGAAGCCTATGGAATGTACGCCTGCAATGG 1991684 Query 161476 TATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTAC 161535 || | || ||||| || || || ||||| ||||| || ||||| || |||||||| Sbjct 1991685 CATCTTGTTTAACCACGAATCCCCTATTCGGGGAGAGACGTTTGTAACTCGCAAGATTAC 1991744 Query 161536 TAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAA 161595 ||| | | || || | || ||| | || || || | |||||| | | Sbjct 1991745 ACGGGCGTTGGCGCGAATCAAGCTTGGCACCCAGAAATGCCTGTATTTGGGTAATTTGGA 1991804 Query 161596 CTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAG--GCTATGTGGTTGATGTTA 161653 | ||||||| ||||| ||||| |||||||||| ||| || | ||| | ||| | Sbjct 1991805 TGCGCGACGAGACTGGGGACATGCCAAAGACTATGTCGAGATGCAA--TGGCTAATGCTG 1991862 Query 161654 CAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 || ||||| | || || |||| || |||||||| || Sbjct 1991863 CAGCAGGACAAACCAGAGGACTTCGTAATTGCCACTGG 1991900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729765365840000