Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=2207822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 172/251 (69%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 141418 GAACAAGACCTGATGCGCCGCGATCTTACCATCAACGCCATGGC-AATGTTTATG--GAT 141474 || ||||||||| ||| ||||| || ||||||||||| ||||| | | | | || Sbjct 438907 GAGCAAGACCTGCAGCGGCGCGACCTGACCATCAACGCGATGGCGCAAG---ACGCCGAC 438851 Query 141475 GGTCAAGTCATCGATCCGTTCGGCGGCATGGACGATCTGAAAAACAAGGTGCTTCGCCAC 141534 || || ||||||| || | |||||| || ||| ||| || | ||||| ||||| Sbjct 438850 GGGCAGCTCATCGACCCCTATGGCGGCCAGGCCGACCTGCAACAGCGCGTGCTGCGCCAT 438791 Query 141535 GTCAATGCGGAAACCTTCAAGGAAGACCCGCTTCGCGTGCTGCGCGTTGCCCGTTTCCTT 141594 || | || |||| ||||||||| | ||| | |||||| | |||||||| Sbjct 438790 GT---GGGCGAGGCCTTTGCCGAAGACCCGGTGCGCATCCTGCGCTTGGCCCGTTTTGCC 438734 Query 141595 GCGCGGTGGAAGGATTTCGATGTCGCTCCGGAGACGTTCAAGCTGCTTCAGGAAATGGCG 141654 || ||| || ||||||| ||||| || ||||| || | ||| | ||| | |||| Sbjct 438733 GCCCGGCTGACGGATTTCAGCGTCGCCCCCGAGACCTTGCATCTGATGCAGCAGATGGTC 438674 Query 141655 GCGACCGGCGA 141665 || | |||||| Sbjct 438673 GCCAGCGGCGA 438663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622775044080000