Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq2224 114 6e-21 >seq2224 Length=1872321 Score = 114 bits (126), Expect = 6e-21 Identities = 129/169 (76%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 21952 AGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCC 22011 || ||| | ||||| ||||||||||| || || || ||||||||||||||||||| ||| Sbjct 1212255 AGTTGCCAGCTCTACCAGCGCAGCGCCGATATCTTTTTGGGCGTGCCCTTCAACATTGCC 1212196 Query 22012 AGCTACGCGCTGCTGACGCACCTCATGGCGGCCA-CGGT-CGGCATGCAGGCCGAGAAGT 22069 ||||||||| ||||||| ||| | |||| ||| | || || | || | | | | | Sbjct 1212195 AGCTACGCGTTGCTGACCCACATGCTGGC--CCAGCAGTGCGACTTGGACGTGGGTGATT 1212138 Query 22070 TCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCA 22118 |||||||| | ||||| ||||||||||| ||| | || ||| | || || Sbjct 1212137 TCATCTGGACGGGCGGCGACTGCCACCTCTACACCAATCACTTCGAGCA 1212089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236591286398000