Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq2372 100 6e-16 seq1 86.0 1e-11 >seq2372 Length=633 Score = 100 bits (110), Expect = 6e-16 Identities = 76/88 (86%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 210918 TTTTGGCGGTGAAG--GTGAGATTTGAACTCACGGAGGACTTTCGCCCTCGACGGTTTTC 210975 ||||||||| ||| |||||||| ||||||||||||| || | |||||| |||||||| Sbjct 27 TTTTGGCGG--AAGCTGTGAGATTCGAACTCACGGAGGGCTCGCACCCTCGCCGGTTTTC 84 Query 210976 AAGACCGTTGCATTAAACCGCTCTGCCA 211003 ||||||| |||||| ||||||||||||| Sbjct 85 AAGACCGGTGCATTCAACCGCTCTGCCA 112 >seq1 Length=2207822 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 207834 TTTGTGCCGACTACCGGAATCGAACTGGTGACCTTTCCCTTACAAGGGGATTGCTCTACC 207893 || |||||| ||| |||| |||||||| |||||| | ||||||||| | |||||||||| Sbjct 872718 TTGGTGCCGGCTATCGGATTCGAACTGATGACCTACCGCTTACAAGGCGGTTGCTCTACC 872659 Query 207894 TACTGAGCTAAGTCGGC 207910 ||||||||||| |||| Sbjct 872658 AACTGAGCTAAGCCGGC 872642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113573522864000