Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16236 143 2e-29 seq9774 140 3e-28 >seq16236 Length=166078 Score = 143 bits (158), Expect = 2e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 ||| ||| | || |||| || ||||||||| | ||| | | | |||||| |||| || Sbjct 14749 CCGCCGTTTGATTTTGTCTGCTTGGAACCCAGCTGACATCCCTGAAATGGCACTGCCTCC 14808 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 || |||| || ||||||||||||||| |||||| || ||||| ||||| |||| || Sbjct 14809 CTGCCATTGCTTGTGTCAGTTTTACGTTGCCAATGGCGAGCTGTCTTGTCAGCTGTACCA 14868 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 |||| | ||||||||| || || || || |||||||| || || |||||||||||||| Sbjct 14869 GCGATCTGCTGACATGGGCCTCGGTGTGCCATTTAACATCGCCAGCTATGCTCTGCTCAC 14928 Query 41183 GTATATGATTGCACACGTTACC 41204 | ||||| || || || ||| Sbjct 14929 CTGCATGATCGCTCAGGTCACC 14950 >seq9774 Length=82367 Score = 140 bits (154), Expect = 3e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 ||| ||| | || |||| || ||||||||| | ||| | | | |||||| |||| || Sbjct 81109 CCGCCGTTTGATTTTGTCTGCTTGGAACCCAGCTGACATCCCTGAAATGGCACTGCCTCC 81050 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 || |||| || ||||||||||||||| |||||| || |||| ||||| |||| || Sbjct 81049 CTGCCATTGCTTGTGTCAGTTTTACGTTGCCAATGGCGAGTTGTCTTGTCAGCTGTACCA 80990 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 |||| | ||||||| | || || || || |||||||| || || |||||||||||||| Sbjct 80989 GCGATCTGCTGACATGAGCCTCGGCGTGCCATTTAACATCGCCAGCTATGCTCTGCTCAC 80930 Query 41183 GTATATGATTGCACACGTTACC 41204 | |||||||| || || ||| Sbjct 80929 CTGCATGATTGCTCAGGTCACC 80908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397368808090000