Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11159 96.9 4e-15 seq14944 95.1 2e-14 >seq11159 Length=298448 Score = 96.9 bits (106), Expect = 4e-15 Identities = 212/317 (67%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 || || |||||||| || | |||||||||||| || | ||| | | |||||||| | Sbjct 94277 CCAGTGCCGATACCTTCAGCTCCATTCACGAGCACGAGTGGGATGATAGGCATGTACCAT 94218 Query 181686 TCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGA--- 181742 || || ||||| | || || | | || ||||| | ||||| || || Sbjct 94217 TCAGGCTCAATCTTCTGGTTGTCCTCCTGGAGATACTTGAGCAGGGGGTCGTCATGAGGG 94158 Query 181743 -GGATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGA 181799 ||||||||| || || ||| ||| ||||| ||||||||||| | | Sbjct 94157 TGGATCAAAGCCCTGGCAAGC------GGTGACAGTTTAGTGAAGATATAACGAGGGCTG 94104 Query 181800 GAAGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTA 181859 | || ||||| || |||||||| || || || || ||||| ||||| | ||||||| Sbjct 94103 GCTGCATCTTTTCCGCCCATGAGGCGGGTGCCGAACTGACCGATGGGCTCCAAAAGGTTA 94044 Query 181860 ATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACT 181919 |||||||| ||||| ||| | ||||| || | |||||| | || ||||| Sbjct 94043 ATGTTGTTAGAACCCACGAAGTTTTGAGCCAAGTTTATTATGGTAGACATGAGCGACACC 93984 Query 181920 TCACCGTGGTGGTAAGC 181936 || ||||||||||| || Sbjct 93983 TCGCCGTGGTGGTAGGC 93967 >seq14944 Length=2286 Score = 95.1 bits (104), Expect = 2e-14 Identities = 274/416 (66%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 11405 ATCTTCTTGCGACCTCGCACACTTGGAAGACCCACTTGGATCTTGCGATCAAAACGACCC 11464 |||| || |||||| || | ||| || || | || || ||| ||||| || || Sbjct 763 ATCTGCTCGCGACCACGGATGTCTGGCAGCGTGACATAGACCTGGCGGTCAAATCGGCCT 704 Query 11465 GGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG 11524 ||||| || | |||| || ||||| ||| ||| || |||||||| || ||| ||| Sbjct 703 GGGCGCAGCAAGGCGGGGTCCAGGATGTCCGGGCGGTTGGTGGCCGCCAT---CACGATG 647 Query 11525 CCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCT 11581 || ||| |||||||| ||||||||| || | || || | || || || Sbjct 646 ACACCGAGGTTGGTCTCAAAGCCGTCCATCTCGACCAGCATCTGGTTGAGGGTCTGCTCG 587 Query 11582 CTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCT 11639 | ||| ||||| | | ||| ||||||| || || || || || || || | Sbjct 586 CGCTCGTCATTGCCA--CCGCCCAGGCCAGCACCACGATGGCGACCGACAGCGTCGATTT 529 Query 11640 CATCAATGAAGACAATACATGGTT-GATTTTCGCGGGCGATTTCAAAGAGATCGCGAACC 11698 | |||||||||| || || ||| | | ||| || | || || | ||||| || Sbjct 528 CGTCAATGAAGATGATGCAGGGTGCGCTCTTCTTGG-CTTGCTCGAACATGTCGCGCACA 470 Query 11699 CTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAAT 11758 | || ||||| ||||||||||||||||| |||| | | | ||| || ||| Sbjct 469 CGGGCTGCGCCCACGCCAACAAACATCTCCACGAAGTCAGAGCCCGAGATGGTGAAGAAA 410 Query 11759 GGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || | |||||||||||| || ||| | |||||||| ||||| || || Sbjct 409 GGCACCTTGGCTTCACCCGCGATAGCCTTGGCCAACAGGGTCTTACCCGTGCCGGG 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627890692800000