Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14944 114 2e-20 seq10358 111 2e-19 seq1448 111 2e-19 seq15668 95.1 1e-14 >seq14944 Length=2286 Score = 114 bits (126), Expect = 2e-20 Identities = 251/369 (68%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| || |||||||| || | |||| ||| ||||| || |||||| || ||| Sbjct 718 CGGTCAAATCGGCCTGGGCGCAGCAAGGCGGGGTCCAGGATGTCCGGGCGGTTGGTGGCC 659 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || || || | || || | | | |||||||| |||||||| || | || ||| Sbjct 658 GCCATCACGATGACACCGAGGTTGGTCTCAAAGCCGTCCATCTCGACCAGCATCTGGTTG 599 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGA 14240 | ||| || ||||| || ||||| || | ||| || |||| || || ||||| Sbjct 598 AGGGTCTGCTCGCGCTCGTCATTGCCA--CCGCCCAGGCCAGCACCACGATGGCGACCGA 541 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGGTT-GATTTTCACGGGCAACTTCAAAG 14299 | ||||| ||||| || ||||| | ||| || ||| | | ||| || || | || Sbjct 540 CAGCGTCGATTTCGTCAATGAAGATGATGCAGGGTGCGCTCTTCTTGGCTTGCT-CGAAC 482 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 || || ||||| | || || || || |||||||||||||| || | | | | || Sbjct 481 ATGTCGCGCACACGGGCTGCGCCCACGCCAACAAACATCTCCACGAAGTCAGAGCCCGAG 422 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || ||| || || || | |||||||||||| || ||| | |||||||| || Sbjct 421 -ATGGTGAAGAAAGGCACCTTGGCTTCACCCGCGATAGCCTTGGCCAACAGGGTCTTACC 363 Query 14419 CGTCCCTGG 14427 ||| || || Sbjct 362 CGTGCCGGG 354 >seq10358 Length=34033 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| ||||| |||||||| || || ||| |||||| Sbjct 110 GGCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGTTGCTGAAAGTCAGACC 169 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||||| ||||||||||| | ||| || || |||||||| || Sbjct 170 CGGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAGATCCCGAGAAGAAAAT 229 Query 130135 CCCCTCCAC 130143 ||||||||| Sbjct 230 CCCCTCCAC 238 >seq1448 Length=175156 Score = 111 bits (122), Expect = 2e-19 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATT-CGAGAAGCACAGAC 130073 |||||| || ||| || |||||||||||||||||||| || || | | ||| ||||| Sbjct 97745 GGCAAAGTCAGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGCTAAAAG-TCAGAC 97803 Query 130074 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 130133 | |||||||| || |||||||||| ||||||||| | ||| || || |||||||| | Sbjct 97804 CCGGCATGAGGCCTCGCTTCTTCAGCCAGAAAATTGAGGCAAAAGAACCCGAGAAGAAAA 97863 Query 130134 TCCCCTCCAC 130143 |||||||||| Sbjct 97864 TCCCCTCCAC 97873 >seq15668 Length=647317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||||||| ||||||| | ||||| || ||||||||| || | ||| || || ||||| Sbjct 300922 TAGATATTGCTCGTGTAGGCCTCAATGCTCTCATTGTTGCCGAGGATCTGAGCAGTGGAA 300981 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || ||||||||||| |||| || ||||||||||| Sbjct 300982 GCAGTGGGCATGGGCGCCAGCAGGAGGCTGTTACG 301016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618296052080000