Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1448 105 7e-18 seq15668 104 3e-17 seq10358 102 9e-17 >seq1448 Length=175156 Score = 105 bits (116), Expect = 7e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| |||||| || || |||||||| || || || | ||||||||||| Sbjct 97885 GCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTTTGCCTCAATTTTCTGGCTG 97826 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| |||||||||||||| |||| ||| ||||||||| || ||||| |||||| Sbjct 97825 AAGAAGCGAGGCCTCATGCCGGGTCTGACTTTTAGCAACGAGCTCATCTCCCGTGACGAG 97766 Query 60111 GGCCTCCA 60118 ||||| || Sbjct 97765 GGCCTGCA 97758 >seq15668 Length=647317 Score = 104 bits (114), Expect = 3e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 || || ||| || ||||||| || || ||||||||||||||| ||| | |||||| || Sbjct 303439 CTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCGAGGTTTTGCTGGTTACT 303498 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGA 79212 ||| ||| |||||||| |||||| |||||||||||| || ||||| |||||| Sbjct 303499 CTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCCTGTCTCGACCTGA 303553 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||||||||||| ||||| ||||||||| |||||| |||||| ||| |||| || Sbjct 303552 CAGGTCGAGACAGGCACGCCGTACATGCTCTACAAAGACGCCTGCAACCGCAAGAGTAAC 303493 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATC 19900 ||| | ||| ||||| | ||||||| || |||||||| || || ||| Sbjct 303492 CAGCAAAACCTCGGCACCATCAAGTGCTCAAACCTGTGCACGGAGATC 303445 >seq10358 Length=34033 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || || |||||||| || || || | | ||||||||||| || ||||| ||| Sbjct 238 GTGGAGGGGATTTTCTTCTCGGGATCTTTTGCTTCGATTTTCTGGCTGAAGAAGCGCGGC 179 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||||| |||| |||| ||||||||| || || || || |||||||| || Sbjct 178 CTCATGCCGGGTCTGACTTTCAGCAACGAGCTCATCTCACGTGATGAGGGCCTGCA 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548401381920000