Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11159 140 4e-28 >seq11159 Length=298448 Score = 140 bits (154), Expect = 4e-28 Identities = 242/352 (69%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| |||||||| || || ||||||| || | | || | || ||| | ||| | Sbjct 94277 CCAGTGCCGATACCTTCAGCTCCATTCACGAGCACGAGTGGGATGATAGGCATGTACCAT 94218 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 |||||||| | || | | ||| ||| || |||||||||| | | |||| || Sbjct 94217 TCAGGCTCAATCTTCTGGTTGTCCTCCTGGAGATACTTGAGCAGGGGGTCGTCATGAGGG 94158 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | || | | ||| ||||| || |||||| || ||||||| ||| || ||| Sbjct 94157 TGGATCAAAGCCCTGGCAAGCGGTGACAGTTTAGTGAAGATATAACGAGGGCTGGCTGCA 94098 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || || || || || || || ||||| || || | |||||||| ||||| | |||| Sbjct 94097 TCTTTTCCGCCCATGAGGCGGGTGCCGAACTGACCGATGGGCTCCAAAAGGTTAATGTTG 94038 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | ||||| ||||||||||||||||| | || ||| ||| | |||| || Sbjct 94037 TTAGAACCCACGAAGTTTTGAGCCAAGTTTATTATGGTAGACATGAGCGACACCTCGCCG 93978 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCA 117503 ||||| || ||||| ||||| || | | |||||| || || |||||||||| Sbjct 93977 TGGTGGTAGGCCGTGTGCTCGGCGATGCTGCCCGCAAGTTGCGCCACCTTCA 93926 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| || || | |||||| ||||| || || || || || || || ||||| Sbjct 94124 GTGAAGATATAACGAGGGCTGGCTGCATCTTTTCCGCCCATGAGGCGGGTGCCGAACTGA 94065 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||||| | ||||| | |||||| | |||||||| || |||||||| || | Sbjct 94064 CCGATGGGCTCCAAAAGGTTAATGTTGTTAGAACCCACGAAGTTTTGAGCCAAGTTTATT 94005 Query 152149 ATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | | || || | | || |||||||| || ||||| ||||| |||||| || Sbjct 94004 ATGGTAGACATG-AGCGACACCTCGCCGTGGTGGTAGGCCGTGTGCTCGGCGATGCTGCC 93946 Query 152208 CGCCAACTGCGCCACCTTCA 152227 ||| | ||||||||||||| Sbjct 93945 CGCAAGTTGCGCCACCTTCA 93926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547092876400000