Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9661 163 3e-35 seq11159 129 7e-25 seq10870 125 8e-24 seq15668 100 3e-16 seq1448 100 3e-16 seq10358 95.1 1e-14 seq13297 84.2 2e-11 >seq9661 Length=48700 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| ||||| | ||||| ||| | Sbjct 32046 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCTTGGAGGTGGAGGCCTC 31987 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | || ||||||| || ||||| || ||||| || || ||||| ||||| Sbjct 31986 TGATACCATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCA 31927 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || |||||||||||||| | ||||| | ||| ||||| | ||||| || Sbjct 31926 ACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGAACCCTTTCCGACTACAA 31867 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || | || ||||||| || ||||| Sbjct 31866 CATCCAAAAGGAGTCAACCCTCCACTTGGTACTGCGTCTGCGTGGTGG 31819 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||||||||| || | ||||| ||| | Sbjct 31817 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAGGTGGAGGCCTCG 31758 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||||| || || || || ||||| || || ||||| ||||| Sbjct 31757 GATACCATCGAGAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCTCCCGACCAA 31698 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| | ||||||| || ||||| | ||||| || Sbjct 31697 CAGCGTCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGCCGAACCCTTTCCGACTACAAC 31638 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| || || || || | || ||||||| || ||||| || Sbjct 31637 ATCCAAAAGGAGTCTACCCTCCACTTGGTACTGCGTCTGCGTGGTGGCCA 31588 >seq11159 Length=298448 Score = 129 bits (142), Expect = 7e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 ||||||||||||| || ||||| | | || ||||| |||||||| ||||||||||||| Sbjct 93926 TGAAGGTGGCGCAACTTGCGGGCAGCATCGCCGAGCACACGGCCTACCACCACGGCGAGG 93985 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 ||||||| | ||||| | ||| | ||||| ||||| || ||| | || ||| | | Sbjct 93986 TGTCGCTCATGTCTACCATAATAAACTTGGCTCAAAACTTCGTGGGTTCTAACAACATTA 94045 Query 32171 ACTTACTCGAG-CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCG 32229 || | | ||| ||||| || ||||| || ||||| ||| || || || ||||| || Sbjct 94046 ACCTTTTGGAGCCCATC-GGTCAGTTCGGCACCCGCCTCATGGGCGGAAAAGATGCAGCC 94104 Query 32230 AGCTCCCGTTACATCTTCAC 32249 ||| | ||||| |||||||| Sbjct 94105 AGCCCTCGTTATATCTTCAC 94124 >seq10870 Length=359794 Score = 125 bits (138), Expect = 8e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || |||||||| ||| | | Sbjct 75384 ATGCAGATCTTTGTGAAGACTCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCT 75443 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || ||||||||||||||||| || ||||| || ||||| Sbjct 75444 GACACAATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAA 75503 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| | || || || ||||| |||||||| || |||| Sbjct 75504 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATG 75540 >seq15668 Length=647317 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 ||| |||||| |||||||||| || || |||| || || || ||||||| |||||| Sbjct 303438 ACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCGAGGTTTTGCTGGTTAC 303497 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 |||| |||||| ||||| |||||| ||||||||| || || ||||||||||| Sbjct 303498 TCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCCTGTCTCGACCTG 303552 >seq1448 Length=175156 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || |||||| ||||| || |||||||| || || || || || ||||||||||| Sbjct 97885 GCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTTTGCCTCAATTTTCTGGCTG 97826 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||||| ||||| ||||| |||||| | ||| |||||||| ||||| || |||||| Sbjct 97825 AAGAAGCGAGGCCTCATGCCGGGTCTGACTTTTAGCAACGAGCTCATCTCCCGTGACGAG 97766 Query 64846 GGGCTCCACCAAGAATTTGC 64865 || || ||| || ||||| Sbjct 97765 GGCCTGCACACTGACTTTGC 97746 >seq10358 Length=34033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || |||||| ||||| || |||||||| || || || || ||| ||||||||||| Sbjct 250 GCGTTTGCCGCAGTGGAGGGGATTTTCTTCTCGGGATCTTTTGCTTCGATTTTCTGGCTG 191 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||||| ||||| ||||| |||||| | || |||||||| ||||| || || ||| Sbjct 190 AAGAAGCGCGGCCTCATGCCGGGTCTGACTTTCAGCAACGAGCTCATCTCACGTGATGAG 131 Query 64846 GGGCTCCACCAAGAATTTGC 64865 || || ||| || ||||| Sbjct 130 GGCCTGCACACTGACTTTGC 111 >seq13297 Length=5556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/269 (68%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTC 32042 ||||||| | || || ||| | |||||||| | | | ||| |||| |||| | Sbjct 4415 GGACGGCTTAAAACCCGGACAAAGAAAGGTGATGTTCACATGCATCAAACGGAACGAC-C 4473 Query 32043 GAGTG-ACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101 |||| | | || |||||||| ||| | ||| ||| | ||||| |||||||| |||| Sbjct 4474 AAGTGGAGGTTAATGTGGCGCAACTGGCAGGCAGCGTCACCGAGCACACGGCCTACCACC 4533 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 | | |||||||||||| | | || | | | | || || ||||| || || | | Sbjct 4534 AAGACGAGGCGTCGCT------CTCTATCATAAGCTTGGCGCAAAACTTCGTGGGCTCCA 4587 Query 32162 ATAACCTGAACTTACTCGAG-CCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAG 32220 | ||| | ||| | | ||| ||||| || ||||| || || || || || || || Sbjct 4588 ACAACGTTAACCTGTTGGAGCCCATC-GGTCAGTTCGGCACGCGCCTTATGGGCGGAAAA 4646 Query 32221 GATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||| || ||| | ||||| |||||||| Sbjct 4647 GATGCAGCCAGCCCTCGTTATATCTTCAC 4675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570182080160000