Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9661 104 1e-17 seq15668 87.8 1e-12 >seq9661 Length=48700 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || ||||||||| ||||| || || ||||| ||||| Sbjct 31828 AGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGA 31887 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || ||||| ||||| || | |||||||||||| || || | || ||| Sbjct 31888 CCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCC 31947 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | || ||| | || || || | |||||| |||| ||| Sbjct 31948 TTATCT-TGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGT 32006 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 32007 AATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || ||||||||| ||||| || || ||||| ||||| Sbjct 31600 AGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGG 31659 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || ||||| || | |||||||||||| || || | || ||| Sbjct 31660 CCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCC 31719 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | || || | || || || | |||||| |||| ||| Sbjct 31720 TTATCTTGGATC-TTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGT 31778 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 31779 GATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq15668 Length=647317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 |||||||| || || || ||||| ||||| | ||||||||| || || | ||||| ||| Sbjct 380322 TCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCTTTG 380263 Query 34612 TCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTC-GCTCTCCACTTCCACGGTTA 34669 ||| ||| ||| | |||||| | ||||| ||| ||| || ||||||| || | Sbjct 380262 TCT-TGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCT-TCAACTTCCAACGTAA 380205 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || || | ||||||||||| |||||||| ||| Sbjct 380204 TTGTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCATCTTG 380164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314660556194000