Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 5e-15 seq2224 89.7 2e-13 >seq1 Length=2207822 Score = 95.1 bits (104), Expect = 5e-15 Identities = 199/296 (67%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 7282 GTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC 7341 || ||||||||||| | | || ||| | || | ||||| ||| ||||||| ||| Sbjct 253205 GTCAACAAAGTCATCATCCTCGGCAACCTGGGGCGCGACCCCGAAGTGCGCTACACCCCC 253264 Query 7342 AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAG 7401 |||||| || ||| ||| | | | ||||||| | | ||||||| | | Sbjct 253265 AACGGCGCAGCCGTGTGCAATCTGCGCATTGCCACCACCCGTAACTGGAAGAGCCGCGAC 253324 Query 7402 ACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCG 7461 | |||| ||| || ||| |||| | || ||||| | | | |||| || Sbjct 253325 AGCGGCGAGCGCCAAGAAGAAACCGAATGGCATTCGGTGGTCATGTATGACCGCCAAGCC 253384 Query 7462 GAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGC 7521 |||||||| ||||| ||||| ||||| || |||||| |||| ||| ||||| Sbjct 253385 GAGATCGCAGGCGAATACCTCAAGAAGGGCCGCCCGGTCTATATCGAGGGCCGCCTGAAG 253444 Query 7522 ACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGT 7577 ||||| |||||||||| | |||||| | ||||| ||||||||||| |||||| Sbjct 253445 ACCCGTAAGTGGCAGGACAAAGACGGCAACGACCGCTACACCACCGA---AATCGT 253497 >seq2224 Length=1872321 Score = 89.7 bits (98), Expect = 2e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53678 TCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGACTCGCGC 53737 |||||||| || | |||||||| | ||| ||||| ||||| || ||||| ||||| ||| Sbjct 1509657 TCATCGCGATAGATGAACATGATCACGTCCGCGTCCTGCTCGATAGCGCCCGACTCCCGC 1509598 Query 53738 AGGTCGCTGAGGACCGGACGCTTGTCGGGGCGAGACTCGCACCCTCGGTTTAGCTGGCAG 53797 |||||||| | | || |||||||| || |||| || | |||||| ||||| | Sbjct 1509597 AGGTCGCTCATCATGGGCCGCTTGTCAGGCCGAGTTTCAACACTTCGGTTGAGCTGAGAC 1509538 Query 53798 AGGGGAAGCACAGGACA 53814 || | || |||||| || Sbjct 1509537 AGCGCAATCACAGGGCA 1509521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194777557396000