Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq13448 194 5e-45 >seq13448 Length=225520 Score = 194 bits (214), Expect = 5e-45 Identities = 251/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 40090 GCCGAAGGTCCCGATCTGTGCGAC--CTTGTCGGCCCCGTACTTCTCGGTGACGTACCGG 40147 ||||||||| ||||||| || |||| ||||| |||||| || | ||||| Sbjct 21147 GCCGAAGGTGGCGATCTGGCTCACGGCTTGGCGGCC--GTACTTGTCTTTAACGTAATCA 21204 Query 40148 ATGACCTCGCCGCGAC--GCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGC 40205 ||||| | ||||| ||| | || |||||||||||| | ||||||||||||||| | Sbjct 21205 ATGACGCGGTCGCGATTGGCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGACACCC 21262 Query 40206 GCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGA 40265 |||| ||||||| ||| |||||||| | || || || ||| || || |||||||||| Sbjct 21263 GCTCCGGGTTCAAGAAGCGCTCGAACAGCAGGTTGTACTGCAGCGGGTCCAGGTCGGTGA 21322 Query 40266 TCCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCAC 40324 || || ||| ||||| |||||||| || || |||||||||| || || || ||| Sbjct 21323 TCAGCAGCGCA-TAGGCCACCAGCGAGCCTGCACCCGAGCCTCGGCCCGGCCCCACCGGG 21381 Query 40325 ACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAG 40384 |||||| || |||||||| ||||||||| | ||||| || ||||||| |||||| Sbjct 21382 CAGCCGTTTTCTTTGGCCCACTTGATGAAGTCCGAGACGATCAAGAAGTAGCCGGGGAAG 21441 Query 40385 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40424 ||||||| |||||| ||| | ||| ||| ||| ||| Sbjct 21442 CCCATCTTGATGATGGTGTTCAGCTCAAACTCCAGCCGCT 21481 Score = 145 bits (160), Expect = 2e-30 Identities = 233/330 (71%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 39022 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 39081 |||||| | | ||||||||| ||||| ||| || | | ||| | ||||| | || Sbjct 20082 GGCCGCGAAGAACTCGGCCGTAAAGTGCACCTTGAGCCAGCCGGTGTGATAGGCCAGCAG 20141 Query 39082 CCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 39141 | ||| ||||||| ||||| |||||||||| |||| || ||||| | | || ||| Sbjct 20142 CGAGTAAGCCGCAGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTC 20201 Query 39142 CCACACCGCCTGGA---TGGCGCTGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAA 39198 ||||| | | | |||| ||| || | | || ||| ||| ||||| |||| Sbjct 20202 GAACACCTCGTCGGCCTTGGCCTCGTCGATGTTGT-TGGC-CGC-CGCGCCCTTGCGGAA 20258 Query 39199 GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAG 39258 | | || | || ||||| |||| | ||||||||||||||||||||| ||||||| Sbjct 20259 GATGGCGCGGTGCTCGGCCATCTCCTCCGCCTTCTTCTTGCCCATGGCCCGGCGCAGCAT 20318 Query 39259 GTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTG 39318 |||||| ||||||||||||||| | || | ||| || | || | ||||||||| || Sbjct 20319 GTCGGCGCCGCCCAGGCTGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCTTG 20378 Query 39319 GTAGATGATGAGCCCGTACGTCGGGTCCAG 39348 ||||| |||| ||||| ||| | |||| Sbjct 20379 GTAGACCATGATGCCGTAGGTCTCGGCCAG 20408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160372113132000